View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_28 (Length: 372)
Name: NF20985_low_28
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 31944671 - 31945022
Alignment:
| Q |
1 |
aaactactagacgatcaaaatcaataactgcatggaatctaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactgctgccacaactag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944671 |
aaactactagacgatcaaaatcaataactgcatggaatttaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactgctgccacaactag |
31944770 |
T |
|
| Q |
101 |
agacatccccttggttgacttatcagcatggccatgggcttgtcctgcccaaatgtccactccaaacgggagttttccggtccctgacttgatcgaactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944771 |
agacatccccttggttgacttatcagcatggccatgggcgtgtcctgcccaaatgtccactccaaacgggagttttccggtccctgacttgatcgaactg |
31944870 |
T |
|
| Q |
201 |
catgcactcaaatacatttctagttannnnnnnattttctacttaaaacaaaaaatcagaagattgaactacaatacaataccctttggaatgtgtagaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944871 |
catgcactcaaatacatttctagtta-ttttttattttctacttaaaacaaaaaatcagaagattgaactacaatacaataccctttggaatgtgtagaa |
31944969 |
T |
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| Q |
301 |
cagaaagtaatgaggtaatctgcagaggaacaggtgaaggtgctagttccatc |
353 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31944970 |
cagaaagtaatgaggtaatctgcagaggaacaagtgaaggtgctagttccatc |
31945022 |
T |
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