View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_3 (Length: 733)
Name: NF20985_low_3
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 125 - 643
Target Start/End: Original strand, 47361093 - 47361597
Alignment:
| Q |
125 |
attgacccaagaaatctgtgaaatgtgtaccttaaataagccaacatcaactagtgttgccccggagtttaaatgtttttcttttatcgtgacacctaag |
224 |
Q |
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| T |
47361093 |
attgacccaagaaatctgtgaaatgtgtaccttaaataagccaacatcaactagtgttgccccggagtttaaatgtttttcttttatcgtgacacctaag |
47361192 |
T |
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| Q |
225 |
aagttataattgcaatgtatcaaaacctggccagtgtaaccatggggcaaaataacaaaagtgtaacagcaatgccaatacnnnnnnnnnnn-tgtttct |
323 |
Q |
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| T |
47361193 |
aagttataattgcaatgtatcaaaacctggccagtgtaaccatggggcaaaataacaaaagtgtaacagcaatgccaatacaaaaaaaaaaaatgtttct |
47361292 |
T |
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| Q |
324 |
gcttcaaaagatctttagataaaaagagttaaagaaagagtagttaaaataagaagtccttaaataaccaacataatgaacaccacttggtgtcttaaga |
423 |
Q |
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| T |
47361293 |
gcttcaaaagatctttagataaaaagagtt---------------aaaataagaagtccttaaataaccaacataatgaacaccacttggtgtcttaaga |
47361377 |
T |
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| Q |
424 |
gaggaaaaagattacaccgggtggaaacaagcaagctaaccaacgcaataaaagtcatcaatcctctcgccaacaacaacaagttaataaccaagcaata |
523 |
Q |
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| T |
47361378 |
gaggaaaaagattacaccgggtggaaacaagcaagctaaccaacgcaataaaagtcatcaatcctctcgacaacaacaacaagttaataaccaagcaata |
47361477 |
T |
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| Q |
524 |
ccccaaaagctggggtgactaatgaattaatcttcacaactcgacacaagaacagccaaattttccataaactcatttagagaaaggactctttacaata |
623 |
Q |
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| T |
47361478 |
ccccaaaagctggggtgactaatgaattaatcttcacaactcgacacaagaacagccaaattttccataaactcgtttagagaaaggactctttacaata |
47361577 |
T |
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| Q |
624 |
acttcttctatagtatttgt |
643 |
Q |
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| T |
47361578 |
acttcttctatagtatttgt |
47361597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 47360975 - 47361031
Alignment:
| Q |
7 |
gagatgaacggaaaatatggacaaagacaataagatgtccttgagaaggatgtcatt |
63 |
Q |
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| T |
47360975 |
gagatgaacggaaaatatggacaaagacaataagatgtccttgagaaggatgtcatt |
47361031 |
T |
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