View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_low_30 (Length: 361)

Name: NF20985_low_30
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_low_30
NF20985_low_30
[»] chr7 (42 HSPs)
chr7 (75-252)||(24711774-24711951)
chr7 (251-345)||(24711597-24711692)
chr7 (22-87)||(40110737-40110801)
chr7 (22-87)||(43955517-43955581)
chr7 (15-87)||(2057395-2057466)
chr7 (14-90)||(6498752-6498827)
chr7 (20-91)||(34398941-34399012)
chr7 (14-89)||(26162124-26162198)
chr7 (14-93)||(40110825-40110903)
chr7 (22-85)||(43955609-43955671)
chr7 (14-87)||(5644677-5644749)
chr7 (21-90)||(28539162-28539230)
chr7 (14-87)||(29065819-29065891)
chr7 (14-87)||(31632722-31632794)
chr7 (21-89)||(23548605-23548672)
chr7 (23-90)||(2057491-2057557)
chr7 (20-89)||(5644770-5644838)
chr7 (14-87)||(25189213-25189285)
chr7 (14-87)||(35776942-35777014)
chr7 (15-91)||(34388353-34388428)
chr7 (21-89)||(35455802-35455869)
chr7 (21-92)||(23455241-23455311)
chr7 (21-87)||(14603256-14603321)
chr7 (21-87)||(39342636-39342701)
chr7 (21-86)||(9784925-9784989)
chr7 (20-89)||(29065912-29065980)
chr7 (14-87)||(29639202-29639274)
chr7 (20-81)||(21635978-21636038)
chr7 (251-345)||(24715950-24716042)
chr7 (22-87)||(34388265-34388329)
chr7 (14-87)||(44915195-44915267)
chr7 (20-87)||(40854062-40854129)
chr7 (14-53)||(46069424-46069463)
chr7 (20-87)||(49052786-49052851)
chr7 (21-87)||(30524255-30524320)
chr7 (14-60)||(43791116-43791162)
chr7 (22-83)||(49052880-49052937)
chr7 (55-92)||(40853982-40854018)
chr7 (39-87)||(29195709-29195756)
chr7 (51-87)||(30080807-30080842)
chr7 (20-60)||(31632828-31632868)
chr7 (26-90)||(46482044-46482107)
[»] chr8 (41 HSPs)
chr8 (14-90)||(3853613-3853688)
chr8 (14-90)||(3858071-3858146)
chr8 (21-89)||(33902665-33902732)
chr8 (20-87)||(17110869-17110935)
chr8 (20-87)||(42711373-42711439)
chr8 (22-92)||(17110964-17111033)
chr8 (14-87)||(36103101-36103173)
chr8 (20-92)||(40046799-40046870)
chr8 (23-90)||(14800056-14800122)
chr8 (14-89)||(44889352-44889426)
chr8 (20-70)||(13404920-13404970)
chr8 (29-87)||(14991692-14991749)
chr8 (21-90)||(29257369-29257437)
chr8 (22-85)||(4156262-4156324)
chr8 (14-89)||(24044958-24045032)
chr8 (20-90)||(28324679-28324748)
chr8 (21-87)||(33377315-33377380)
chr8 (14-87)||(23011734-23011806)
chr8 (14-87)||(33986004-33986076)
chr8 (21-85)||(29482825-29482888)
chr8 (21-89)||(44346696-44346763)
chr8 (21-87)||(14239-14303)
chr8 (14-89)||(515543-515617)
chr8 (20-71)||(8049269-8049320)
chr8 (20-85)||(13404829-13404893)
chr8 (26-87)||(31807409-31807468)
chr8 (32-89)||(37268112-37268168)
chr8 (20-69)||(40046883-40046932)
chr8 (22-66)||(8689152-8689196)
chr8 (14-69)||(35404753-35404808)
chr8 (29-87)||(1088303-1088360)
chr8 (41-87)||(27322687-27322732)
chr8 (14-84)||(35979015-35979084)
chr8 (20-85)||(3853709-3853773)
chr8 (20-85)||(3858167-3858231)
chr8 (55-92)||(29611383-29611419)
chr8 (38-87)||(32626069-32626117)
chr8 (20-53)||(38573488-38573521)
chr8 (20-87)||(31976599-31976664)
chr8 (51-91)||(42711300-42711339)
chr8 (20-48)||(42711324-42711352)
[»] chr1 (40 HSPs)
chr1 (14-91)||(15034746-15034822)
chr1 (14-92)||(34756422-34756499)
chr1 (14-87)||(23536067-23536139)
chr1 (14-91)||(30190223-30190299)
chr1 (15-87)||(4038075-4038146)
chr1 (14-90)||(24273221-24273296)
chr1 (13-87)||(32287933-32288006)
chr1 (22-87)||(15034659-15034723)
chr1 (14-87)||(26501080-26501152)
chr1 (20-93)||(27935578-27935650)
chr1 (22-90)||(4038170-4038237)
chr1 (22-89)||(47165221-47165287)
chr1 (14-92)||(8224763-8224840)
chr1 (14-92)||(43622979-43623056)
chr1 (14-83)||(27804269-27804337)
chr1 (22-87)||(27804360-27804424)
chr1 (26-91)||(45565390-45565454)
chr1 (20-90)||(40264123-40264192)
chr1 (20-89)||(6470693-6470761)
chr1 (14-87)||(38277415-38277487)
chr1 (20-91)||(38277508-38277577)
chr1 (14-90)||(44410308-44410383)
chr1 (20-92)||(50005172-50005243)
chr1 (26-93)||(29446744-29446810)
chr1 (21-68)||(32647319-32647366)
chr1 (22-84)||(51847855-51847916)
chr1 (14-95)||(28632587-28632666)
chr1 (29-86)||(32573024-32573080)
chr1 (31-88)||(32652205-32652261)
chr1 (20-84)||(37036956-37037019)
chr1 (14-69)||(946930-946985)
chr1 (14-69)||(37448402-37448457)
chr1 (29-87)||(44410413-44410470)
chr1 (14-87)||(49659217-49659288)
chr1 (20-85)||(34756520-34756584)
chr1 (14-87)||(39887127-39887199)
chr1 (14-67)||(44570697-44570750)
chr1 (14-87)||(50005079-50005151)
chr1 (39-87)||(31166310-31166357)
chr1 (55-91)||(32572936-32572971)
[»] chr6 (17 HSPs)
chr6 (20-91)||(9285643-9285713)
chr6 (20-92)||(34244987-34245058)
chr6 (22-92)||(8574690-8574759)
chr6 (14-92)||(29889435-29889512)
chr6 (14-87)||(28918165-28918237)
chr6 (22-90)||(776077-776144)
chr6 (14-90)||(9763009-9763084)
chr6 (14-89)||(15299512-15299585)
chr6 (14-85)||(6919710-6919780)
chr6 (22-87)||(776175-776239)
chr6 (22-87)||(8574760-8574824)
chr6 (28-92)||(6919808-6919871)
chr6 (14-89)||(13487273-13487347)
chr6 (29-87)||(9763114-9763171)
chr6 (14-68)||(15299417-15299471)
chr6 (46-89)||(33733430-33733472)
chr6 (29-90)||(1368474-1368534)
[»] chr3 (40 HSPs)
chr3 (14-89)||(46672803-46672877)
chr3 (14-87)||(27251981-27252053)
chr3 (14-92)||(44692909-44692986)
chr3 (14-87)||(9129431-9129503)
chr3 (14-87)||(9137538-9137610)
chr3 (14-95)||(28092206-28092286)
chr3 (26-87)||(44436258-44436318)
chr3 (22-89)||(37321548-37321614)
chr3 (21-90)||(36397996-36398064)
chr3 (22-91)||(44692818-44692886)
chr3 (14-91)||(47767428-47767504)
chr3 (22-87)||(49457343-49457407)
chr3 (14-70)||(31070422-31070478)
chr3 (22-87)||(5415783-5415847)
chr3 (14-83)||(21307532-21307600)
chr3 (14-90)||(37054391-37054466)
chr3 (14-92)||(42005953-42006030)
chr3 (22-87)||(5415878-5415942)
chr3 (20-92)||(46429489-46429560)
chr3 (22-89)||(46635855-46635921)
chr3 (20-91)||(47284319-47284389)
chr3 (14-68)||(19475834-19475888)
chr3 (21-87)||(34088571-34088636)
chr3 (20-90)||(39110391-39110460)
chr3 (14-56)||(44436345-44436387)
chr3 (21-91)||(48947601-48947670)
chr3 (21-87)||(53129850-53129915)
chr3 (22-87)||(9129344-9129408)
chr3 (22-87)||(9137451-9137515)
chr3 (20-89)||(31189403-31189471)
chr3 (38-83)||(35279926-35279970)
chr3 (21-90)||(53470436-53470504)
chr3 (29-69)||(50168625-50168665)
chr3 (21-87)||(671626-671691)
chr3 (14-68)||(30766571-30766625)
chr3 (30-87)||(7302346-7302402)
chr3 (30-87)||(46001364-46001420)
chr3 (20-60)||(19475923-19475963)
chr3 (29-85)||(42130694-42130749)
chr3 (22-90)||(44288467-44288534)
[»] scaffold1562 (2 HSPs)
scaffold1562 (15-93)||(493-570)
scaffold1562 (23-87)||(405-468)
[»] scaffold1158 (2 HSPs)
scaffold1158 (15-93)||(2023-2100)
scaffold1158 (23-87)||(2125-2188)
[»] chr4 (43 HSPs)
chr4 (14-87)||(1112605-1112677)
chr4 (20-91)||(15660276-15660346)
chr4 (14-89)||(49111399-49111473)
chr4 (20-90)||(857332-857401)
chr4 (14-91)||(1112709-1112785)
chr4 (20-92)||(10128067-10128138)
chr4 (20-95)||(4896640-4896714)
chr4 (20-87)||(7352905-7352971)
chr4 (14-89)||(31473847-31473921)
chr4 (22-89)||(36455905-36455971)
chr4 (15-92)||(5715739-5715815)
chr4 (14-90)||(11040965-11041039)
chr4 (20-89)||(28845964-28846032)
chr4 (22-87)||(36456021-36456085)
chr4 (22-90)||(14982277-14982344)
chr4 (14-85)||(4896719-4896789)
chr4 (20-91)||(11348330-11348400)
chr4 (14-84)||(10633035-10633104)
chr4 (21-90)||(2125854-2125922)
chr4 (26-91)||(7352808-7352872)
chr4 (14-89)||(16516169-16516243)
chr4 (22-89)||(55266870-55266936)
chr4 (14-68)||(1539659-1539713)
chr4 (28-86)||(4441338-4441395)
chr4 (24-89)||(1107149-1107213)
chr4 (20-85)||(26250911-26250975)
chr4 (14-71)||(42844558-42844615)
chr4 (14-89)||(467890-467962)
chr4 (22-82)||(28845876-28845935)
chr4 (20-87)||(15660183-15660249)
chr4 (22-87)||(41139475-41139537)
chr4 (37-87)||(31742874-31742923)
chr4 (21-90)||(35470119-35470187)
chr4 (14-87)||(41498577-41498649)
chr4 (20-87)||(1107051-1107118)
chr4 (14-48)||(4441415-4441449)
chr4 (39-85)||(42542979-42543024)
chr4 (20-90)||(42844636-42844705)
chr4 (22-59)||(857266-857303)
chr4 (20-85)||(10127976-10128040)
chr4 (14-59)||(29091164-29091209)
chr4 (22-87)||(42776637-42776701)
chr4 (55-95)||(42775615-42775654)
[»] chr2 (32 HSPs)
chr2 (14-87)||(14365700-14365772)
chr2 (14-87)||(14537199-14537271)
chr2 (14-90)||(41461602-41461677)
chr2 (21-90)||(14365793-14365861)
chr2 (14-87)||(27033490-27033562)
chr2 (14-90)||(11716405-11716480)
chr2 (21-92)||(35047687-35047757)
chr2 (22-89)||(784888-784954)
chr2 (20-87)||(17180297-17180363)
chr2 (21-95)||(1583817-1583890)
chr2 (14-87)||(10480119-10480191)
chr2 (14-85)||(11532254-11532324)
chr2 (14-85)||(11793897-11793967)
chr2 (21-87)||(769036-769101)
chr2 (21-87)||(3092282-3092347)
chr2 (21-87)||(11141305-11141370)
chr2 (29-83)||(11684603-11684656)
chr2 (21-87)||(33189265-33189330)
chr2 (14-95)||(13017771-13017851)
chr2 (23-91)||(10244173-10244240)
chr2 (20-84)||(28740599-28740662)
chr2 (22-89)||(45094480-45094546)
chr2 (29-71)||(11716501-11716543)
chr2 (14-71)||(30698296-30698353)
chr2 (14-59)||(32839649-32839694)
chr2 (14-71)||(40026079-40026136)
chr2 (20-87)||(784793-784859)
chr2 (55-92)||(14537309-14537345)
chr2 (32-85)||(41461517-41461569)
chr2 (39-87)||(7228038-7228085)
chr2 (20-60)||(11532177-11532217)
chr2 (14-90)||(44256194-44256268)
[»] chr5 (44 HSPs)
chr5 (14-85)||(2721558-2721628)
chr5 (15-90)||(9764426-9764500)
chr5 (14-92)||(37722892-37722969)
chr5 (14-87)||(25935288-25935360)
chr5 (14-87)||(40090412-40090484)
chr5 (20-92)||(15804317-15804388)
chr5 (24-87)||(15374057-15374119)
chr5 (22-89)||(26281275-26281341)
chr5 (22-87)||(2316378-2316442)
chr5 (14-91)||(22303868-22303944)
chr5 (26-87)||(40643916-40643976)
chr5 (22-86)||(3563278-3563341)
chr5 (14-90)||(15373957-15374032)
chr5 (22-86)||(20523228-20523291)
chr5 (22-86)||(33245378-33245441)
chr5 (14-89)||(20523131-20523205)
chr5 (22-89)||(22766950-22767016)
chr5 (22-87)||(9764338-9764402)
chr5 (20-93)||(40809335-40809407)
chr5 (14-89)||(2316466-2316539)
chr5 (14-89)||(35379342-35379415)
chr5 (14-85)||(19533905-19533975)
chr5 (21-87)||(927302-927367)
chr5 (29-87)||(6634015-6634072)
chr5 (31-85)||(28828369-28828422)
chr5 (21-87)||(41762220-41762285)
chr5 (14-87)||(16515105-16515177)
chr5 (22-90)||(23091960-23092026)
chr5 (22-87)||(23092057-23092121)
chr5 (14-67)||(32390059-32390112)
chr5 (14-93)||(16514999-16515076)
chr5 (20-87)||(32250102-32250167)
chr5 (14-85)||(37145499-37145569)
chr5 (35-85)||(13243512-13243561)
chr5 (20-90)||(28828440-28828509)
chr5 (22-92)||(34982211-34982279)
chr5 (14-83)||(9894320-9894388)
chr5 (32-85)||(15804399-15804451)
chr5 (24-85)||(32389974-32390034)
chr5 (20-91)||(32470975-32471043)
chr5 (22-91)||(40809436-40809504)
chr5 (31-69)||(13243476-13243514)
chr5 (14-55)||(12479938-12479979)
chr5 (26-87)||(32470882-32470942)
[»] scaffold0009 (2 HSPs)
scaffold0009 (14-95)||(41989-42069)
scaffold0009 (29-87)||(42080-42137)
[»] scaffold0048 (1 HSPs)
scaffold0048 (22-85)||(82945-83007)
[»] scaffold0129 (2 HSPs)
scaffold0129 (14-85)||(19786-19855)
scaffold0129 (14-85)||(19200-19269)
[»] scaffold0400 (1 HSPs)
scaffold0400 (29-86)||(4514-4570)
[»] scaffold0365 (1 HSPs)
scaffold0365 (29-86)||(5158-5214)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-67)||(10905-10958)
[»] scaffold0169 (1 HSPs)
scaffold0169 (14-68)||(4093-4147)
[»] scaffold0318 (1 HSPs)
scaffold0318 (29-90)||(2864-2924)
[»] scaffold0044 (2 HSPs)
scaffold0044 (22-83)||(56369-56429)
scaffold0044 (15-53)||(56307-56345)
[»] scaffold0301 (1 HSPs)
scaffold0301 (21-85)||(7153-7216)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 24711951 - 24711774
Alignment:
Q  75 ccaaacacactctaagggaatctcatcaagtgttgcaacttgcaacgtgttcaccctgtgtatcccttcttcatttctggtatgcggctgcatccatcat 174  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24711951 ccaaacataccctaagggaatctcatcaagtgttgcaacttgcaacgtgttcaccctgtgtatcccttcttcatttcttgtatgcggctgcatccatcat 24711852  T
Q  175 cttctcatcattggaccttacccgttacgatagccaacatggcatgattaaatgtcactaacacaagttcgacacgtc 252  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24711851 cttctcatcattggaccttacccgttacgatagccaacatggtatgattaaatgtcactaacacaagttcgacacgtc 24711774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 24711692 - 24711597
Alignment:
Q  251 tcataaaatggactggaagaagt-atgttcaaacaagggtagtaacattgagaacaaaaatagcacggtcagtgatagtggttcttgcggaaaatt 345  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||||    
T  24711692 tcataaaatggactggaagaagtcatgttcaaacaagggtagtaacattgagaacaaaaatagcatggtcagtgatagtggtaattacggaaaatt 24711597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 40110801 - 40110737
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  40110801 aaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 40110737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 43955581 - 43955517
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  43955581 aaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 43955517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 2057466 - 2057395
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||| |||||||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  2057466 tcacctcaaagtagttgaattccctcaaaacattacattcgctcaaaacattc-ccccatccaaacacactct 2057395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 6498752 - 6498827
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  6498752 ttcacatcaaagtatttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaag 6498827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 34398941 - 34399012
Alignment:
Q  20 tcaaagtagttgaattt-cctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  34398941 tcaaagtagttgaattcacctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaagg 34399012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 26162124 - 26162198
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  26162124 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacatt-cccccatccaaacacactctaa 26162198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 40110825 - 40110903
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||| |||||||  ||||||||||||||||||| |||||    
T  40110825 ttcacctcaaagtagttgaattccctcaaaacattacattccctcgaaacatt-tccccatccaaacacactcttaggga 40110903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 43955609 - 43955671
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  43955609 aaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacact 43955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5644749 - 5644677
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||||    
T  5644749 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccattcaaacacactct 5644677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28539162 - 28539230
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  28539162 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-cccccatccaaacacactctaag 28539230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 29065891 - 29065819
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |  |||||||||||||||||    
T  29065891 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-catccatccaaacacactct 29065819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 31632794 - 31632722
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  31632794 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacattc-ccccatccaaacacactct 31632722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 23548605 - 23548672
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||    
T  23548605 caaagtatttgaatttcctcaaaacaatacattccctcaaaacatt-cctccatccaaacacactctaa 23548672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 2057491 - 2057557
Alignment:
Q  23 aagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  2057491 aagtagttgaattccctcaaaacattactttccctcaaaatatt-cccccatccaaacacactctaag 2057557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 5644770 - 5644838
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| || ||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  5644770 tcaaaataattgaattccctcaaaacattacattacctcaaaacgtt-cccccatccaaacacactctaa 5644838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 25189213 - 25189285
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| |||||||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  25189213 ttcacttcaaagtatttgaattccctcaaaacattgcattacctcaaaacatt-cccacatccaaacacactct 25189285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 35776942 - 35777014
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||    
T  35776942 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacatt-ccctcatccaaacacactct 35777014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 34388353 - 34388428
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||| |||||||||||||||| |||||||| |||||||| |||||||||||| ||  ||| ||||||||||||||||    
T  34388353 tcacctcaaagtagttgaattccctcaaaatattacattccctcaaaacatt-ccatcattcaaacacactctaagg 34388428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 35455869 - 35455802
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||| ||||||| ||| |||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  35455869 caaagtatttgaattcccttaaaacaatacattccctcaaaacattc-ccccatccaaacacactctaa 35455802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 23455241 - 23455311
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||||| ||||||| |||||||||| |||||| |||||||||||| ||| |||||||||||| ||||||||    
T  23455241 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-ccctcatccaaacacattctaaggg 23455311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 14603256 - 14603321
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  14603256 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactct 14603321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 39342636 - 39342701
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  39342636 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactct 39342701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 9784925 - 9784989
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    ||||||| ||||||| |||||||||| |||||| |||||||||||| || ||||||||||||||||    
T  9784925 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-cctccatccaaacacactc 9784989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 29065912 - 29065980
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| || ||||||| ||||||||||||||||| ||| |||||||| || |||||||||||||||||||    
T  29065912 tcaaaataattgaattccctcaaaacattacattaccttaaaacatt-cctccatccaaacacactctaa 29065980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 29639202 - 29639274
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| ||||| || ||||||||||||| ||||||||||| ||| |||||||| |||||||||| |||||||||    
T  29639202 ttcacctcaaaatatttgaatttcctcataacattacattccctgaaaacatt-cccccatccatacacactct 29639274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 21635978 - 21636038
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaaca 81  Q
    ||||||||||| |||| | ||||||||||||||| ||||||||||||  |||||||||||||    
T  21635978 tcaaagtagttaaattccttcaaaacattacattccctcaaaacatt-tccccatccaaaca 21636038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 24716042 - 24715950
Alignment:
Q  251 tcataaaatggactggaagaagt-atgttcaaacaagggtagtaacattgagaacaaaaatagcacggtcagtgatagtggttcttgcggaaaatt 345  Q
    |||||||||||||||||| |||| | ||||||||||||||| | |   ||||| ||||||||||| | ||||| |||||||| ||||||| |||||    
T  24716042 tcataaaatggactggaaaaagttaggttcaaacaagggtaatga---tgagagcaaaaatagcaagatcagtaatagtggtacttgcggcaaatt 24715950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 34388329 - 34388265
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||||  |||| |||||||| ||||||||||| |||  |||||||||||||||||||    
T  34388329 aaagtagttgaattctctcagaacattacttttcctcaaaatatt-tccccatccaaacacactct 34388265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 44915267 - 44915195
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| | |||||||||||| || |||||||| ||| | | ||||||||||||||||    
T  44915267 ttcacctcaaagtagttgaattccttcaaaacattacgttccctcaaaaaatt-ctctcatccaaacacactct 44915195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 40854062 - 40854129
Alignment:
Q  20 tcaaagtagttgaatttcc-tcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| || |||||| |||||||| ||||| |||||| |||| |||||||||||||||    
T  40854062 tcaaagtagttgaattcccctcaaaatattacattccctcagaacatttcccc-atccaaacacactct 40854129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 46069463 - 46069424
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatt 53  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  46069463 ttcacctcaaagtagttgaattccctcaaaacattacatt 46069424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 49052851 - 49052786
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||   | ||||||||||||||||    
T  49052851 tcaaagtagttgaattcactcaaaacattaca-ttcctcaaaacatt-ttctcatccaaacacactct 49052786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 30524320 - 30524255
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||||||||||||||||| | ||||||||||  | ||||||| |||||||||    
T  30524320 caaagtatttgaattccctcaaaacattacattccttcaaaacatt-actccatccatacacactct 30524255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 43791162 - 43791116
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaa 60  Q
    ||||| |||||||| ||||||| ||||||||||||||||| ||||||    
T  43791162 ttcacctcaaagtatttgaattccctcaaaacattacattccctcaa 43791116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 49052880 - 49052937
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||||||||    
T  49052880 aaagtagttgaattccctcaaaacattaca-ttcctc-aaacatt--ccccatccaaacaca 49052937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 40854018 - 40853982
Alignment:
Q  55 cctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  40854018 cctcaaaacattccccc-atccaaacacactctaaggg 40853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 29195756 - 29195709
Alignment:
Q  39 tcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||||| |||||||| ||| || |||||||||||||||||    
T  29195756 tcaaaacattacattacctcaaaatatt-cctccatccaaacacactct 29195709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 30080807 - 30080842
Alignment:
Q  51 atttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| ||||||||||||||||||||    
T  30080807 atttcctcaaaacatt-cccccatccaaacacactct 30080842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 31632868 - 31632828
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaa 60  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  31632868 tcaaagtatttgaattccctcataacattacatttcctcaa 31632828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 46482044 - 46482107
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||||||| |||||||||||||||| | |||| |||||  | |||| |||||||||||||||    
T  46482044 tagttgaattttctcaaaacattacattccttcaacacatt-tctccattcaaacacactctaag 46482107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 3853688 - 3853613
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  3853688 ttcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaacattc-ccccatccaaacacactctaag 3853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 3858146 - 3858071
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  3858146 ttcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaacattc-ccccatccaaacacactctaag 3858071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 33902732 - 33902665
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  33902732 caaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaa 33902665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 17110935 - 17110869
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  17110935 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-tccccatccaaacacactct 17110869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 42711373 - 42711439
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  42711373 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-ccccaatccaaacacactct 42711439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 17110964 - 17111033
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||    
T  17110964 aaagtagttgaattccctcaaaacattacattccctcaaaacatt-tctccatccaaacacactctaaggg 17111033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 36103173 - 36103101
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||    
T  36103173 ttcacatcaaagtatttgaatttccttaaaacattacattccctcaaaacatt-cctccatccaaacacactct 36103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 40046870 - 40046799
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| |  ||||||||||||||||| ||||    
T  40046870 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-catccatccaaacacactcttaggg 40046799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 14800056 - 14800122
Alignment:
Q  23 aagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  14800056 aagtagttgaattccctcaaaacattactttccctcaaaatatt-cccccatccaaacacactctaag 14800122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 44889426 - 44889352
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| ||||||| ||||||||||||| ||| |||||||||||| || |||||||||||||||||||    
T  44889426 ttcacatcaaagtatttgaattccctcaaaacattatattccctcaaaacatt-cctccatccaaacacactctaa 44889352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 13404920 - 13404970
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcccc 70  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13404920 tcaaagtagttgaattccctcaaaacattacattccctcaaaacattcccc 13404970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 14991749 - 14991692
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  14991749 ttgaattgcctcaaaacattacattacctcaaaacattc-ccccatccaaacacactct 14991692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 29257369 - 29257437
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  29257369 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactctaag 29257437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 4156262 - 4156324
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  4156262 aaagtagttgaattccctcaaaacattacattccctcaaaatatt-ctcccatccaaacacact 4156324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 24045032 - 24044958
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  24045032 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt-ccctcatccaaacacactctaa 24044958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 28324679 - 28324748
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||| ||| ||||||| | ||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  28324679 tcaaggtatttgaattccttcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaag 28324748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 33377315 - 33377380
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| |||||||||| || ||| |||||||||||| ||||||||||||||||||||    
T  33377315 caaagtatttgaattccctcaaaacaatatattccctcaaaacatt-cccccatccaaacacactct 33377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 23011806 - 23011734
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||| | ||| ||||||||||||||    
T  23011806 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacatt-ctcccgtccaaacacactct 23011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 33986076 - 33986004
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| |||||||  |||||||||||||||| | |||| ||||| ||||||||||||||||||||    
T  33986076 ttcacctcaaagtatttgaattctctcaaaacattacattacttcaagacatt-cccccatccaaacacactct 33986004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 29482825 - 29482888
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||||| ||||||| |||||||||| ||| || |||||||||||| ||||||||||||||||||    
T  29482825 caaagtatttgaattccctcaaaacaatacgttccctcaaaacatt-cccccatccaaacacact 29482888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 44346696 - 44346763
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| |||||||||||||||| |||||    
T  44346696 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacattctaa 44346763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 14303 - 14239
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| ||||||||||||| |||| |||||||  |||||||||||||||||||    
T  14303 caaagtatttgaattcccttaaaacattacattccctccaaacatt--ccccatccaaacacactct 14239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 515543 - 515617
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| ||||| | ||| ||||||||||||| | |||||||||| || |||||||||||||||||||    
T  515543 ttcacatcaaagtatttgaactcccttaaaacattacattccttcaaaacatt-cctccatccaaacacactctaa 515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 8049320 - 8049269
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccc 71  Q
    |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||    
T  8049320 tcaaagtatttgaattccctcaaaacattatattccctcaaaacattccccc 8049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 13404893 - 13404829
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||    
T  13404893 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-tccccatccaaacacact 13404829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 31807468 - 31807409
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||| ||||||||||||||| |||||||||||||| | | ||||||||||||||||    
T  31807468 tagttgaattccctcaaaacattaca-ttcctcaaaacatt-ctctcatccaaacacactct 31807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 37268112 - 37268168
Alignment:
Q  32 aatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||| ||||||||||||||||| |||||||| ||| |||| |||||||||||||||||    
T  37268112 aattccctcaaaacattacattacctcaaaatatt-cccctatccaaacacactctaa 37268168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 40046883 - 40046932
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||    
T  40046883 tcaaaataattgaattccctcaaaacattacattacctcaaaacattccc 40046932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 8689196 - 8689152
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacatt 66  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||    
T  8689196 aaagtagttgaattccctcaaaacattacattccttcaaaacatt 8689152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 35404753 - 35404808
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    ||||| |||||||| |||||||||||||||| |||||||| ||||  |||||||||    
T  35404753 ttcacctcaaagtatttgaatttcctcaaaatattacattacctcgtaacattccc 35404808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 1088303 - 1088360
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||||| ||||||  ||||||||||| || ||| |||||||||||||    
T  1088303 ttgaatttcctcaaaacaatacattctctcaaaacatt-cctccacccaaacacactct 1088360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 27322687 - 27322732
Alignment:
Q  41 aaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||    
T  27322687 aaaacattacattccctcaaaacatt-ctcccatccaaacacactct 27322732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 35979015 - 35979084
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacac 84  Q
    ||||| |||||||| ||||||| ||||  || |||||||| |||||||||||| || ||||||||||||||    
T  35979015 ttcacctcaaagtatttgaattccctcttaagattacattccctcaaaacatt-cctccatccaaacacac 35979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 3853709 - 3853773
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||| |||| |||||||||||| |||||||| |||  |||||||||||||||||    
T  3853709 tcaaaataattgaattccctccaaacattacattacctcaaaatatt-tccccatccaaacacact 3853773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 3858167 - 3858231
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||| |||| |||||||||||| |||||||| |||  |||||||||||||||||    
T  3858167 tcaaaataattgaattccctccaaacattacattacctcaaaatatt-tccccatccaaacacact 3858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 29611419 - 29611383
Alignment:
Q  55 cctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29611419 cctcaaaacattccccc-atccaaacacactctaaggg 29611383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 32626069 - 32626117
Alignment:
Q  38 ctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| |||||||| ||| ||||||||||| ||||||||    
T  32626069 ctcaaaacattacattccctcaaaagatt-cccccatccaagcacactct 32626117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 38573488 - 38573521
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatt 53  Q
    ||||||||||||||||||||||||||| ||||||    
T  38573488 tcaaagtagttgaatttcctcaaaacactacatt 38573521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31976599 - 31976664
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| || ||||||||||||||| ||||||||| | |||||| ||  |||||||||||| |||||||    
T  31976599 tcaaaatatttgaatttcctcaaagcattacattacttcaaaatat--cccccatccaaaaacactct 31976664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 42711339 - 42711300
Alignment:
Q  51 atttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  42711339 atttcctcaaaacatttcccc-atccaaacacactctaagg 42711300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 42711352 - 42711324
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacatt 48  Q
    |||||||||||||||||||||||||||||    
T  42711352 tcaaagtagttgaatttcctcaaaacatt 42711324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 15034746 - 15034822
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  15034746 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaagg 15034822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 34756499 - 34756422
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  34756499 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacactctctaaggg 34756422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 23536139 - 23536067
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23536139 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 23536067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 30190223 - 30190299
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  30190223 ttcacctcaaaatagttgaattacctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaagg 30190299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4038146 - 4038075
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  4038146 tcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccacccaaacacactct 4038075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 24273221 - 24273296
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  24273221 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacatt-cccccatccaaacacactctaag 24273296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 32287933 - 32288006
Alignment:
Q  13 tttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||    
T  32287933 tttcacttcaaagtatttgaatttcctcaaaacattacattccctcaaaac-tttcctccatccaaacacactct 32288006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 15034723 - 15034659
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||    
T  15034723 aaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactct 15034659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 26501080 - 26501152
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||    
T  26501080 ttcacatcaaagtatttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactct 26501152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 27935578 - 27935650
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||||||||| |||||    
T  27935578 tcaaagtagttgaatttcctcaaaacattacattccctcaaaatatt-tctccatccaaacacactcttaggga 27935650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 4038170 - 4038237
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||||||    
T  4038170 aaagtagttgaattccctcaaaacattactttccctcaaaatatt-cccccatccaaacacactctaag 4038237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 47165221 - 47165287
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  47165221 aaagtatttgaattccctcaaaacattacatttcctcaaaacatt-tctccatccaaacacactctaa 47165287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 8224840 - 8224763
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||| || |||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||    
T  8224840 ttcacatcaaagtatttcaattccctcaaaacattacattccctcaaaacatt-ccctcatccaaacacactcttaggg 8224763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 43622979 - 43623056
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||| || ||||| |||||||||||||||| | |||||||||| |||||||||||||||||||| ||||    
T  43622979 ttcacctcaaagtatttaaattttctcaaaacattacattccatcaaaacatt-cccccatccaaacacactcttaggg 43623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 27804337 - 27804269
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    ||||| ||||| |||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||    
T  27804337 ttcacctcaaaatagttgaattccctcaaaatattacattccctcaaaacattc-ccccatccaaacaca 27804269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 27804360 - 27804424
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| | || ||||||||||||||||||||||||| || |||||||||||||||||    
T  27804360 aaagtagttgaattccttctaaacattacatttcctcaaaacatt-cctccatccaaacacactct 27804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 45565454 - 45565390
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||| ||||||    
T  45565454 tagttgaattccctcaaaacattacattctctcaaaacattc-ccccatccaaacacaccctaagg 45565390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 40264123 - 40264192
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||    
T  40264123 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-cccccatccaaacacactataag 40264192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 6470693 - 6470761
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||| | ||||||| |||||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  6470693 tcaaagaatttgaattccctcaaaacattacattctctcaaaacatt-ccgccatccaaacacactctaa 6470761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 38277487 - 38277415
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| | ||||||||||||||| |||||||| ||| | | ||||||||||||||||    
T  38277487 ttcacctcaaagtagttgaattccttcaaaacattacattccctcaaaatatt-ctctcatccaaacacactct 38277415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 38277508 - 38277577
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||| |||||    
T  38277508 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt--ccccatccaaacacactataagg 38277577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 44410383 - 44410308
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| ||||| ||||||||||  || ||||||||||||| |||||||||||| | |||||||||| ||||||||||    
T  44410383 ttcacctcaaaatagttgaattcgcttaaaacattacattccctcaaaacatt-ctcccatccaaatacactctaag 44410308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 50005172 - 50005243
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| ||| || ||||||||||||||| ||||||    
T  50005172 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-cctccatccaaacacactataaggg 50005243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 29446810 - 29446744
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    |||||||||| ||||||||||||||||| | ||||||||||| |||| | |||||||||||| |||||    
T  29446810 tagttgaattccctcaaaacattacattccttcaaaacattc-ccccgttcaaacacactcttaggga 29446744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 32647366 - 32647319
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  32647366 caaagtatttgaatttcctcaaaacaatacatttcttcaaaacattcc 32647319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 51847916 - 51847855
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacac 84  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||| || ||||||||||||||    
T  51847916 aaagtatttgaatttctttaaaacattacattacctcaaaacatt-cctccatccaaacacac 51847855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 28632587 - 28632666
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||| |||||||| |||||||  |||||||||||||||| |||| ||||||| ||| |||||||||||||| | |||||||    
T  28632587 ttcacctcaaagta-ttgaattctctcaaaacattacattccctccaaacatt-ccctcatccaaacacactattagggaat 28632666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 32573024 - 32573080
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    ||||||| ||||||||||||||||| |||||||| ||| ||||||||||| |||||||    
T  32573024 ttgaattccctcaaaacattacattacctcaaaatatt-cccccatccaatcacactc 32573080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 32652261 - 32652205
Alignment:
Q  31 gaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactcta 88  Q
    |||||||||||||||| |||||||||||||||||||  | ||||||||| ||||||||    
T  32652261 gaatttcctcaaaacaatacatttcctcaaaacatt-tctccatccaaatacactcta 32652205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 37036956 - 37037019
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacac 84  Q
    ||||| || ||||||| |||||||||||||||||  ||||||||||| ||| |||||||||||||    
T  37036956 tcaaaatatttgaattccctcaaaacattacattcactcaaaacatt-ccctcatccaaacacac 37037019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 946985 - 946930
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    ||||| ||| |||| |||||||||||||||| | |||||| |||||||||||||||    
T  946985 ttcacctcatagtatttgaatttcctcaaaataatacattccctcaaaacattccc 946930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 37448402 - 37448457
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    ||||| |||||||| || |||| |||||||||||||||||  ||||||||||||||    
T  37448402 ttcacatcaaagtatttaaattccctcaaaacattacattctctcaaaacattccc 37448457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 44410413 - 44410470
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||||| ||||||| |||||||| |||||||  |||||||||||||||    
T  44410413 ttgaattccctcaaaactttacattacctcaaaatattcccca-atccaaacacactct 44410470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 49659288 - 49659217
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| || |||| ||||  ||||||||||| |||||| |||||  |||||||||||||||||||    
T  49659288 ttcacctcaaagtatttaaattccctcgtaacattacattccctcaatacatt--ccccatccaaacacactct 49659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34756520 - 34756584
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||| ||||||||||||| ||| |||||||| |||  |||||||||||||||||    
T  34756520 tcaaaataattgaattccctcaaaacattatattacctcaaaatatt-tccccatccaaacacact 34756584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39887199 - 39887127
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||||| ||||||||| | ||| ||| |||||||| ||| |||| |||||||||||    
T  39887199 ttcacatcaaagtatttgaatttcttcaaaacatcatattcccttaaaacatt-ccctcatctaaacacactct 39887127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 44570750 - 44570697
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattc 67  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| |||||||||||||    
T  44570750 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacattc 44570697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 50005151 - 50005079
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||| |||||||||  ||||||||||||||||  ||||||| ||| ||  ||||||||||||||||    
T  50005151 ttcacctcaaagaagttgaattcgctcaaaacattacattctctcaaaatatt-ccgtcatccaaacacactct 50005079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 31166357 - 31166310
Alignment:
Q  39 tcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  31166357 tcaaaacattacattatctcaaaacatt-ccctcatccaaacacactct 31166310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 32572971 - 32572936
Alignment:
Q  55 cctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||||||||||||| |||||||||||||||||||    
T  32572971 cctcaaaacattccccc-atccaaacacactctaagg 32572936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 9285713 - 9285643
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  9285713 tcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactctaagg 9285643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34244987 - 34245058
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  34244987 tcaaagtatttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaaggg 34245058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 8574759 - 8574690
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  8574759 aaagtagttgaattccctcaaaacattacattcactcaaaacatt-tccccatccaaacacactctaaggg 8574690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 29889435 - 29889512
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||| ||||||| ||||||||||||||||| | |||||||||| || ||||||||||||||||||||||    
T  29889435 ttcacatcaaagtatttgaattccctcaaaacattacattccatcaaaacatt-cctccatccaaacacactctaaggg 29889512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 28918237 - 28918165
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||    
T  28918237 ttcacctcaaagtatttgaatttccttaaaacattacattccctcaaaacatt-cctccatccaaacacactct 28918165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 776144 - 776077
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  | ||||| ||||||||||||||    
T  776144 aaagtagttgaatttcctcaaaacattacattccctcaaaacatt-tctccatctaaacacactctaag 776077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 9763084 - 9763009
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||  |||| |||||||||||| ||||    
T  9763084 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-tccccttccaaacacactataag 9763009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 15299512 - 15299585
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||||||||||| | ||||||||||||||| ||||||||||||  ||||||||||||||| |||||    
T  15299512 ttcacctcaaagtagttgaattccttcaaaacattacattccctcaaaacatt--ccccatccaaacacattctaa 15299585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 6919780 - 6919710
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||| |||| || |||||||||||||||    
T  6919780 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaccatt-cctccatccaaacacact 6919710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 776175 - 776239
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  776175 aaagtagttgaatttcctcaaaacattacattccctcaaaacatt-ttcctatccaaacacactct 776239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 8574760 - 8574824
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| |||||||||||||||||  |||||||||||  |||||||||||||||||||    
T  8574760 aaagtagttgaattccctcaaaacattacattcactcaaaacatt-tccccatccaaacacactct 8574824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 6919808 - 6919871
Alignment:
Q  28 gttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||| ||||    
T  6919808 gttgaattccctcaaaacattactttccctcaaaacatt-cccccatccaaacacactcttaggg 6919871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 13487347 - 13487273
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| ||||||| ||||| |||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  13487347 ttcacctcaaagtatttgaattccctcataacactacattccctcaaaacattc-ccccatctaaacacactctaa 13487273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 9763114 - 9763171
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||||||||||||| |||||||| ||| || |||||||||||||||||    
T  9763114 ttgaattccctcaaaacattacattacctcaaaatatt-cctccatccaaacacactct 9763171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 15299471 - 15299417
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||| ||||||||||||||||  ||||||||||||||||  |||||||||||||    
T  15299471 ttcacctcaaagtagttgaattctctcaaaacattacattcgctcaaaacattcc 15299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 33733472 - 33733430
Alignment:
Q  46 attacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  33733472 attacattccctcaaaacattccccc-atccaaacacactctaa 33733430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 1368534 - 1368474
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||| |||| ||||||||  ||||||||||||| || ||||||||||||||||||    
T  1368534 ttgaattcccttaaaatattacattctctcaaaacattcctcc-atccaaacacactctaag 1368474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 46672803 - 46672877
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  46672803 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaa 46672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 27251981 - 27252053
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27251981 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaca-tccccccatccaaacacactct 27252053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 44692909 - 44692986
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||    
T  44692909 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactcttaggg 44692986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9129431 - 9129503
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  9129431 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-ccctcatccaaacacactct 9129503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9137538 - 9137610
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  9137538 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-ccctcatccaaacacactct 9137610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 28092286 - 28092206
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  28092286 ttcacctcaaagtaattgaattccctcaaaacatcacatttcctcaaaacattc-ccccatccaaacatactctaagagaat 28092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44436318 - 44436258
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  44436318 tagttgaatttcctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 44436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 37321614 - 37321548
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||    
T  37321614 aaagtagttgaatttcctcaaaacattacttttcctcaaaatatt-cccccatccaaatacactctaa 37321548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 36397996 - 36398064
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| |||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  36397996 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-cccccatccaaacacactctaag 36398064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 44692886 - 44692818
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  44692886 aaagtggttgaattccctcaaaacattactttccctcaaaacattc-ccccatccaaacacactctaagg 44692818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 47767504 - 47767428
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  47767504 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacattc-ccccatccaaacacactctaagg 47767428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 49457407 - 49457343
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  49457407 aaagtggttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 49457343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 31070478 - 31070422
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcccc 70  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  31070478 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattcccc 31070422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5415847 - 5415783
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||| |||| |||||||||||||||    
T  5415847 aaagtagttgaattccctcaaaacattacattccctcaaaatatt-cccctatccaaacacactct 5415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 21307532 - 21307600
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    ||||| |||||||| ||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||    
T  21307532 ttcacctcaaagtatttgaattccctcaaaacattacattcccgcaaaacatt-cccccatccaaacaca 21307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 37054466 - 37054391
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37054466 ttcacctcaaggtatttgaattccttcaaaacattacattcccttaaaacattc-ccccatccaaacacactctaag 37054391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 42005953 - 42006030
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||| ||| || |||| | ||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  42005953 ttcacctcaaggtatttaaattccttcaaaacattacattccctcaaaacatt-cccccatccaaacacactcttaggg 42006030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 5415878 - 5415942
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| | |||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  5415878 aaagtagttgaattccatcaaaacattactttccctcaaaatatt-cccccatccaaacacactct 5415942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 46429489 - 46429560
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| || ||||||| | ||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  46429489 tcaaaataattgaattccttcaaaacattacattacctcaaaatatt-ccctcatccaaacacactctaaggg 46429560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 46635921 - 46635855
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||| |||||||||||||||||||||||||  |||||||||||   | ||||||||||||||||||    
T  46635921 aaagtatttgaatttcctcaaaacattacattagctcaaaacatt-ttctcatccaaacacactctaa 46635855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 47284319 - 47284389
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| ||| | | ||||||||||||||||||||    
T  47284319 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-ctctcatccaaacacactctaagg 47284389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 19475888 - 19475834
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  19475888 ttcacctcaaagtatttgaattacctcataacattacattccctcaaaacattcc 19475834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 34088636 - 34088571
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| |||||||||| |||||| ||||||||||||  | |||||||||||||||||    
T  34088636 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-tctccatccaaacacactct 34088571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 39110460 - 39110391
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||||||||||||| || ||||||||||||||  |||||||||||  |  |||||||||||||||||||    
T  39110460 tcaaagtagttgaattcccacaaaacattacattcgctcaaaacatt-tcttcatccaaacacactctaag 39110391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 44436345 - 44436387
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcc 56  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  44436345 ttcacctcaaagtagttgaattccctcaaaacattacatttcc 44436387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 48947670 - 48947601
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||| |||||||  ||||||||| |||||| |||||||||||| |  |||||||||||||||||||||    
T  48947670 caaagtatttgaattctctcaaaacaatacattccctcaaaacatt-cttccatccaaacacactctaagg 48947601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 53129850 - 53129915
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| ||||||||||||| |||| ||||||| ||| ||||||||||||||||    
T  53129850 caaagtatttgaattcccttaaaacattacattccctcgaaacatt-ccctcatccaaacacactct 53129915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 9129408 - 9129344
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| | ||||||||||||||| |||||||| | | | ||||||||||||||||||    
T  9129408 aaagtagttgaattccatcaaaacattacattccctcaaaatagt-ctcccatccaaacacactct 9129344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 9137515 - 9137451
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| | ||||||||||||||| |||||||| | | | ||||||||||||||||||    
T  9137515 aaagtagttgaattccatcaaaacattacattccctcaaaatagt-ctcccatccaaacacactct 9137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31189403 - 31189471
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||| |||||||  |||||||||||||||| |||||||||||| | | ||| ||||||||||||||    
T  31189403 tcaaagtatttgaattctctcaaaacattacattacctcaaaacatt-ctctcattcaaacacactctaa 31189471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 35279926 - 35279970
Alignment:
Q  38 ctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  35279926 ctcaaaacattacattccctcaaaacatt-cccccatccaaacaca 35279970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 53470436 - 53470504
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| |||||||||| || ||| ||||||||||||  || |||||||||||||||||||    
T  53470436 caaagtatttgaattccctcaaaacaatagattccctcaaaacatt-tcctcatccaaacacactctaag 53470504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 50168625 - 50168665
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  50168625 ttgagtttcctcaaaacattacattacctcaaaacattccc 50168665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 671626 - 671691
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||  |||||| |||||||||| |||||| |||||||||||| |||| ||||||| |||||||    
T  671626 caaagtatctgaattccctcaaaacaatacattccctcaaaacatt-cccctatccaaaaacactct 671691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 30766625 - 30766571
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| ||||||||||||||    
T  30766625 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacattcc 30766571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 7302402 - 7302346
Alignment:
Q  30 tgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||| | |||||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  7302402 tgaattccttcaaaacattacattctctcaaaacatt-ccctcatccaaacacactct 7302346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 46001420 - 46001364
Alignment:
Q  30 tgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||| |||| |||||||||||| |||||||| ||| || |||||||||||||||||    
T  46001420 tgaattccctcgaaacattacattacctcaaaatatt-ccgccatccaaacacactct 46001364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 19475963 - 19475923
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaa 60  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  19475963 tcaaagtatttgaattccctcataacattacatttcctcaa 19475923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 42130749 - 42130694
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||||| ||||||||||||||||  |||||||| ||| |||||| |||||||||||    
T  42130749 ttgaattccctcaaaacattacatcacctcaaaatatt-cccccacccaaacacact 42130694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 44288467 - 44288534
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||| ||||||| | ||||||||||| ||| |||||||||||| || ||||||||||| ||| ||||    
T  44288467 aaagtatttgaattccatcaaaacattatattacctcaaaacatt-cctccatccaaacatactataag 44288534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 493 - 570
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||    
T  493 tcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactataaggga 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 468 - 405
Alignment:
Q  23 aagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||| |||||||||||||  || |||||||| ||| ||||||||||||||||||||    
T  468 aagtagttgaattccctcaaaacattattttccctcaaaatatt-cccccatccaaacacactct 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 2100 - 2023
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  2100 tcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactataaggga 2023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2125 - 2188
Alignment:
Q  23 aagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||| |||||||||||||  || |||||||| ||| ||||||||||||||||||||    
T  2125 aagtagttgaattccctcaaaacattattttccctcaaaatatt-cccccatccaaacacactct 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 1112677 - 1112605
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1112677 ttcacctcaaagtagttgaattccctcgaaacattacatttcctcaaaacattc-ccccatccaaacacactct 1112605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 15660276 - 15660346
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  15660276 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-ccctcatccaaacacactctaagg 15660346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 49111399 - 49111473
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  49111399 ttcacctcaaaatagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaa 49111473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 857332 - 857401
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  857332 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-tccccatccaaacacactctaag 857401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 1112709 - 1112785
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| |||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  1112709 ttcacctcaaagtagttgaattccctcgaaacattacatttgctcaaaaca-tccccccatccaaacaaactctaagg 1112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 10128067 - 10128138
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||    
T  10128067 tcaaagtagttgaattccctcaaaacattacattctctcaaaacatt-cccccatccaaatacactctaaggg 10128138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 4896714 - 4896640
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  4896714 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-cccccatccaaacacactctaagggaat 4896640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 7352905 - 7352971
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  7352905 tcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-tccccatccaaacacactct 7352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 31473921 - 31473847
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  31473921 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacattc-ccccatccaaacacactctaa 31473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 36455971 - 36455905
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  36455971 aaagtagttgaattccctcaaaacattagattccctcaaaacattc-ccccatccaaacacactctaa 36455905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 5715815 - 5715739
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||| |||||||| ||||||| |||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||    
T  5715815 tcacatcaaagtatttgaattacctcaaaacattacattatctcaaaacatt-ccctcatccaaacacactctaaggg 5715739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 11041039 - 11040965
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||| |||  ||||||||||||||||||||||    
T  11041039 ttcacctcaaagtagttgaattctctcaaaacattacattccctcaaaatatt--ccccatccaaacacactctaag 11040965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 28845964 - 28846032
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||  |||||||||||||||||||||    
T  28845964 tcaaagtagttgaattccctcaaaacattatattccctcaaaacatt-tccccatccaaacacactctaa 28846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 36456021 - 36456085
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||||    
T  36456021 aaagtagttgaatttcctcaaaatattacattccctcaaaacatt-cctccatccaaacacactct 36456085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 14982344 - 14982277
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  14982344 aaagtagttaaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaag 14982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 4896719 - 4896789
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||    
T  4896719 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaatatt-tccccatccaaacacact 4896789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 11348330 - 11348400
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||| |||||||| ||||||||||||||||| ||| |||||||| |||||||||||| |||||||||||    
T  11348330 tcaaagttgttgaattccctcaaaacattacattcccttaaaacatt-cccccatccaaatacactctaagg 11348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 10633104 - 10633035
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacac 84  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  10633104 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacattc-ccccatccaaacacac 10633035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 2125922 - 2125854
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| |||||||||| |||||| |||||||| |||||||| ||||||||||||||||||    
T  2125922 caaagtatttgaattccctcaaaacaatacattccctcaaaatattccccc-atccaaacacactctaag 2125854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 7352872 - 7352808
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||| | ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  7352872 tagttgaattccatcaaaacattacattccctcaaaacattc-ccccatccaaacacactttaagg 7352808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 16516243 - 16516169
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||| || |||| | ||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  16516243 ttcacatcaaagtatttaaattccttcaaaacattacattccgtcaaaacattc-ccccatccaaacacactctaa 16516169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 55266870 - 55266936
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||||| |||||||| |||| |||||||||||||||| |  |||||||||||||||||||    
T  55266870 aaagtagttgaattccctcaaaatattatatttcctcaaaacatt-catccatccaaacacactctaa 55266936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 1539713 - 1539659
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  1539713 ttcacctcaaagtatttgaattccctcaaaacattacattccctcaaaacattcc 1539659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 4441395 - 4441338
Alignment:
Q  28 gttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    |||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  4441395 gttgaattccctcaaaacattacattccctcaaaacatt-ccaccatccaaacacactc 4441338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 1107149 - 1107213
Alignment:
Q  24 agtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||| ||||||||||||| ||| |||||||| ||| |||||||||||| |||||||||    
T  1107149 agtagttgaattccctcaaaacattatattccctcaaaatatt-cccccatccaaatacactctaa 1107213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 26250975 - 26250911
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||    
T  26250975 tcaaaataattgaatttcctcaaaacattacattacctcaaaatatt-ccctcatccaaacacact 26250911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 42844615 - 42844558
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccc 71  Q
    ||||| |||||||||||||||| | |||||| |||||||| |||||||||||||||||    
T  42844615 ttcacctcaaagtagttgaattccttcaaaatattacattccctcaaaacattccccc 42844558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 467890 - 467962
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| ||||||| |||||||| ||||||||||||||||| | ||||||||||  | |||||||||||||||||||    
T  467890 ttcacttcaaagtggttgaatt-cctcaaaacattacattccatcaaaacatt--ctccatccaaacacactctaa 467962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 28845935 - 28845876
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacac 82  Q
    |||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||    
T  28845935 aaagtagttgaattccctcgaaacattacattccctcaaaacatt-cctccatccaaacac 28845876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 15660249 - 15660183
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| ||| |||| |||||||||||||||    
T  15660249 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-cccctatccaaacacactct 15660183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 41139537 - 41139475
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||| ||||||||||||||||||||||||| ||||||| | |   |||||||||||||||||||    
T  41139537 aaagtatttgaatttcctcaaaacattacattacctcaaagctt---ccccatccaaacacactct 41139475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 31742874 - 31742923
Alignment:
Q  37 cctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||||||    
T  31742874 cctcaaaacattacattccctcaaaacatt-cctccatccaaacacactct 31742923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35470187 - 35470119
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| ||||||| |||||||||| |||||| ||||||||||||  | ||||| ||||||||||||||    
T  35470187 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-tcaccatctaaacacactctaag 35470119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 41498577 - 41498649
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| ||||| || ||||||| | ||||||||||||||| |||||||| ||| || |||||||||||||||||    
T  41498577 ttcacctcaaaataattgaattccttcaaaacattacattccctcaaaatatt-cctccatccaaacacactct 41498649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 1107118 - 1107051
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||| | ||||||||||||||| ||| |||| | |  || ||||||||||||||||    
T  1107118 tcaaagtagttgaattccttcaaaacattacattcccttaaaaaaatttcctcatccaaacacactct 1107051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 4441415 - 4441449
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacatt 48  Q
    ||||| |||||||||||||||||||||||||||||    
T  4441415 ttcacctcaaagtagttgaatttcctcaaaacatt 4441449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 42542979 - 42543024
Alignment:
Q  39 tcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||||||||||||| |||||||||||| || |||||||||||||||    
T  42542979 tcaaaacattacattccctcaaaacatt-ccaccatccaaacacact 42543024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 42844636 - 42844705
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| || |||| || ||||||||||||||||| |||||||| |||  ||||||||||||||||| ||||    
T  42844636 tcaaaataattgatttccctcaaaacattacattacctcaaaatatt-tccccatccaaacacactataag 42844705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 857303 - 857266
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctca 59  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  857303 aaagtagttgaattccctcaaaacattacattccctca 857266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10128040 - 10127976
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| || ||||||| | ||||||||||||||| | |||||| ||| ||||||||||||||||||    
T  10128040 tcaaaataattgaattccttcaaaacattacattacttcaaaatatt-cccccatccaaacacact 10127976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 29091209 - 29091164
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctca 59  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||    
T  29091209 ttcacatcaaagtatttgaattccctcaaaacattacattccctca 29091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 42776701 - 42776637
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||| |||||||| |||||||||||||||  ||| |||||||| |  |||||||||||||||||    
T  42776701 aaagtatttgaatttactcaaaacattacataacctaaaaacatt-cttccatccaaacacactct 42776637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 42775654 - 42775615
Alignment:
Q  55 cctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  42775654 cctcaaaacattccccc-atccaaacacactttaagggaat 42775615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 14365772 - 14365700
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  14365772 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 14365700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 14537271 - 14537199
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  14537271 ttcacctcaaagtagttgaattacctcaaaacattacattccctcaaaacattc-ccccatccaaacacactct 14537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 41461602 - 41461677
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  41461602 ttcacctcaaaatagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaag 41461677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 14365793 - 14365861
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  14365793 caaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccatccaaacacactctaag 14365861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 27033562 - 27033490
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  27033562 ttcacctcaaagtagttgaattccctcaaaacattacattctctcaaaacattc-ccccatccaaacacactct 27033490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 11716480 - 11716405
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |  ||||||||||||||||||||    
T  11716480 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cttccatccaaacacactctaag 11716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 35047687 - 35047757
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||||| ||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  35047687 caaagtatttgaattcccttaaaacaatacatttcctcaaaacatt-cccccatccaaacacactctaaggg 35047757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 784888 - 784954
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||||| ||||||||||||||||| | |||||| ||| ||||||||||||||||||||||    
T  784888 aaagtagttgaattccctcaaaacattacattccatcaaaatatt-cccccatccaaacacactctaa 784954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 17180363 - 17180297
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  17180363 tcaaaatagttgaattccctcaaaacattacattccctcaaaacatt-ccctcatccaaacacactct 17180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 1583817 - 1583890
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  1583817 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactctaagagaat 1583890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 10480191 - 10480119
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| ||||  ||||||||||| ||||||||||||| |||||||||||||||||||    
T  10480191 ttcacctcaaagtatttgaattccctcgtaacattacattccctcaaaacattc-ccccatccaaacacactct 10480119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 11532254 - 11532324
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||| ||| ||| ||||||||||||||||||    
T  11532254 ttcacctcaaagtatttgaattccctcaaaacattacattccctccaaatatt-cccccatccaaacacact 11532324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 11793967 - 11793897
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||| ||| ||||||||||||||||||    
T  11793967 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaatatt-cccccatccaaacacact 11793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 769101 - 769036
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| ||||||||||||| |||||||||||||||||||    
T  769101 caaagtatttgaattcccttaaaacaatacattccctcaaaacattc-ccccatccaaacacactct 769036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 3092347 - 3092282
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||| || ||||||||| |||||||    
T  3092347 caaagtatttgaatttcctcaaaacaatacattccctcaaaacatt-cctccatccaaatacactct 3092282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 11141370 - 11141305
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| ||||||||||||| |||||||||||||||||||    
T  11141370 caaagtatttgaattcccttaaaacaatacattccctcaaaacattc-ccccatccaaacacactct 11141305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 11684656 - 11684603
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  11684656 ttgaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacaca 11684603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 33189265 - 33189330
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  33189265 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactct 33189330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 13017851 - 13017771
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||| |||||||| ||||||| ||| |||| |||||||| ||||||||||||  || ||||||||||||||||||| ||||    
T  13017851 ttcacctcaaagtatttgaattcccttaaaatattacattccctcaaaacatt-tccacatccaaacacactctaagagaat 13017771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 10244240 - 10244173
Alignment:
Q  23 aagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||||||||| |||||||||||||| || ||||| || ||| | ||||||||||||||||||||||    
T  10244240 aagtagttgaattccctcaaaacattactttccctcagaatatt-ctcccatccaaacacactctaagg 10244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 28740662 - 28740599
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacac 84  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||  |||||| |||||||||    
T  28740662 tcaaagtatttgaattccctcaaaacattacattccctcaaaacatt-tccccattcaaacacac 28740599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 45094480 - 45094546
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||||||| |||| ||||||||||||| ||| |||||||||||| ||| ||| ||||||||||||||    
T  45094480 aaagtagttaaattccctcaaaacattatattccctcaaaacatt-ccctcattcaaacacactctaa 45094546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 11716501 - 11716543
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccc 71  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  11716501 ttgaattccctcaaaacattacattccctcaaaacattccccc 11716543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 30698353 - 30698296
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccc 71  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| |||||||||||||||||    
T  30698353 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacattccccc 30698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32839649 - 32839694
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctca 59  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  32839649 ttcacgtcaaagtatttgaattccctcaaaacattacattccctca 32839694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 40026136 - 40026079
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccc 71  Q
    ||||| |||||||| || |||||||||||||||||| ||| |||||||| ||||||||    
T  40026136 ttcacctcaaagtatttaaatttcctcaaaacattatattacctcaaaatattccccc 40026079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 784859 - 784793
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||||||| |||| | ||||||||||||||| ||||||||||||    |||||||||||||||||    
T  784859 tcaaagtagttaaattccttcaaaacattacattccctcaaaacatt-tttccatccaaacacactct 784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 14537309 - 14537345
Alignment:
Q  55 cctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14537309 cctcaaaacattcccc-catccaaacacactctaaggg 14537345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 41461569 - 41461517
Alignment:
Q  32 aatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||| ||||||||||||||||| |||||||| |||  |||||||||||||||||    
T  41461569 aattccctcaaaacattacattacctcaaaatatt-tccccatccaaacacact 41461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 7228038 - 7228085
Alignment:
Q  39 tcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||||    
T  7228038 tcaaaacattacattctctcaaaacatt-tccccatccaaacacactct 7228085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 11532177 - 11532217
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaa 60  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  11532177 tcaaagtatttgaattccctcataacattacatttcctcaa 11532217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 44256194 - 44256268
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| ||||| || | ||||| ||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||    
T  44256194 ttcacctcaaaataatcgaattccctcaaaacattacattacctc-aaatatt-cccccatccaaacacactataag 44256268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 2721558 - 2721628
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  2721558 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacact 2721628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 9764426 - 9764500
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||| |||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  9764426 tcacctcaaagtagttgaattccctcaaaacattacattccctcgaaacatt-cccccatccaaacacactctaag 9764500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 37722892 - 37722969
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  37722892 ttcacctcaaagtatttgaattccctcaaaacattacattccctcaaaatatt-cccccatccaaacacactctaaggg 37722969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 25935288 - 25935360
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  25935288 ttcacctcaaagtatttgaatttcctcataacattacattccctcaaaacatt-cccccatccaaacacactct 25935360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 40090412 - 40090484
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40090412 ttcacctcaaagtatttgaattccatcaaaacattacatttcctcaaaacatt-cccccatccaaacacactct 40090484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 15804388 - 15804317
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||    
T  15804388 tcaaagtagttgaattccctcaaaacactacattccctcaaaacattc-ccccatccaaacacactctcaggg 15804317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 15374057 - 15374119
Alignment:
Q  24 agtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  15374057 agtagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactct 15374119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 26281275 - 26281341
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  26281275 aaagtagttgaattccctcaaaacattacattccctcaaaacgtt-cccccatccaaacacactctaa 26281341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 2316442 - 2316378
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  2316442 aaagtagttgaattccctcaaaatattacattccctcaaaacattc-ccccatccaaacacactct 2316378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 22303868 - 22303944
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||| |||| ||| ||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  22303868 ttcacctcaaggtatttgaattccttcaaaacattacattccctcaaaacatt-cccccatccaaacacactctaagg 22303944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 40643916 - 40643976
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  40643916 tagttgaattccctcaaaacattacattccctcaaaacatt-cccccatccaaacacactct 40643976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 3563341 - 3563278
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  3563341 aaagtagttgaattccctcaaaacattacattccctcaaaacatt-cccctatccaaacacactc 3563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 15374032 - 15373957
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| |  ||||||||||||||||||||    
T  15374032 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaaatt-cttccatccaaacacactctaag 15373957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 20523228 - 20523291
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    |||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  20523228 aaagtagttgaattccctcaaaacattacattctctcaaaacatt-cccccatccaaacacactc 20523291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 33245378 - 33245441
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    ||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||    
T  33245378 aaagtagttgaattttctcaaaacattacattccatcaaaacatt-cccccatccaaacacactc 33245441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 20523205 - 20523131
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||||||||||||| ||||| || |||||||| |||||||||||| | ||||||||||||||||||||    
T  20523205 ttcacctcaaagtagttgaattccctcagaatattacattccctcaaaacatt-ctcccatccaaacacactctaa 20523131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22767016 - 22766950
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    |||||| ||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  22767016 aaagtatttgaattccctcaaaacattatattccctcaaaacattc-ccccatccaaacacactctaa 22766950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 9764402 - 9764338
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| ||||||||||||||||||||    
T  9764402 aaagtagttgaattccctcaaaacattactttccctcaaaatatt-cccccatccaaacacactct 9764338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 40809407 - 40809335
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    |||||||||||||||| ||||||||||||| |||  |||||||||||  ||||||||||||||||||| |||||    
T  40809407 tcaaagtagttgaattccctcaaaacattatattctctcaaaacatt-tccccatccaaacacactcttaggga 40809335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 2316466 - 2316539
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||||||||||||    |||||||||||||||||||    
T  2316466 ttcacctcaaagtagttgaattctctcaaaacattacattccctcaaaacatt--ttccatccaaacacactctaa 2316539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 35379415 - 35379342
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaa 89  Q
    ||||| |||||| | ||||||| |||||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  35379415 ttcacttcaaagaatttgaattccctcaaaacattacattatctcaaaacatt--ccccatccaaacacactctaa 35379342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 19533905 - 19533975
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||| ||||||| ||||| ||||||||||| |||||||||||| || |||||||||||||||    
T  19533905 ttcacctcaaagtatttgaattccctcataacattacattccctcaaaacatt-cctccatccaaacacact 19533975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 927367 - 927302
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| |||||||||| |||||| ||||||||||||  |||||||||||||||||||    
T  927367 caaagtatttgaattccctcaaaacaatacattccctcaaaacatt-tccccatccaaacacactct 927302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 6634072 - 6634015
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  6634072 ttgaattccctcaaaacattacattacctcaaaata-tccccccatccaaacacactct 6634015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 28828422 - 28828369
Alignment:
Q  31 gaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28828422 gaattccctcaaaacattacattccctcaaaacattc-ccccatccaaacacact 28828369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 41762220 - 41762285
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  41762220 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cccccatccaaacacactct 41762285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 16515105 - 16515177
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    ||||| |||||| ||||||||| ||||||||||||||||| ||| |||||||| | | ||||||||||||||||    
T  16515105 ttcacctcaaagaagttgaattccctcaaaacattacattccctaaaaacatt-ctctcatccaaacacactct 16515177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 23092026 - 23091960
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    |||||||||||||| | ||||||||||||||| |||||||| |||  ||||||| ||||||||||||||    
T  23092026 aaagtagttgaattccttcaaaacattacattccctcaaaatatt--ccccatcaaaacacactctaag 23091960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 23092057 - 23092121
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||||| | |||||||||||||||||   |||||||||| ||||||||||||||||||||    
T  23092057 aaagtagttgaactccctcaaaacattacattcgttcaaaacatt-cccccatccaaacacactct 23092121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 32390059 - 32390112
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattc 67  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  32390059 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaaaattc 32390112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 16515076 - 16514999
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggga 93  Q
    ||||| |||||| ||||||||| ||||||||| ||||||| ||||||||||||  | ||||||||||||| | |||||||    
T  16515076 ttcacctcaaagaagttgaattccctcaaaaccttacattccctcaaaacatt--ctccatccaaacacattataaggga 16514999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 32250102 - 32250167
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||| ||| ||||||| |||||||||||||| || ||||||||||||  |||||||||||||||||||    
T  32250102 tcaaggtatttgaattccctcaaaacattactttccctcaaaacatt--ccccatccaaacacactct 32250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 37145499 - 37145569
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||| |||||||  |||| ||||||||||| |||||||||||| ||||||||||||| ||||    
T  37145499 ttcacctcaaagtatttgaattctctcataacattacattccctcaaaacatt-cccccatccaaacccact 37145569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 13243512 - 13243561
Alignment:
Q  35 ttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  13243512 ttcctcaaaacattacattacctcaaaatatt-cccccatccaaacacact 13243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 28828440 - 28828509
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||| || ||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||| ||||    
T  28828440 tcaaaataattgaattccctcaaaacattacattacctcaaaatatt-tccccatccaaacacactataag 28828509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 34982279 - 34982211
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaaggg 92  Q
    ||||| |||||||| ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| ||||    
T  34982279 aaagtggttgaattccctcaaaacat-acattccctcaaaacatt-cccctatccaaacacactcttaggg 34982211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 9894320 - 9894388
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    ||||| |||||||| ||||||| |||   ||||||||||| |||||||||||| ||||||||||||||||    
T  9894320 ttcacctcaaagtatttgaattccctggtaacattacattccctcaaaacatt-cccccatccaaacaca 9894388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 15804399 - 15804451
Alignment:
Q  32 aatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||| ||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  15804399 aattccctcaaaacattacattccctcaaaacatt-tccccatccaaacacact 15804451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 32390034 - 32389974
Alignment:
Q  24 agtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||||||||||| |||||||| |||||||| | |||||||||| ||| ||||||||||||||    
T  32390034 agtagttgaattccctcaaaatattacattccttcaaaacatt-ccctcatccaaacacact 32389974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 32470975 - 32471043
Alignment:
Q  20 tcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    |||||||||||||||| ||||||||||||||||| |||||| |   |  || ||||||||||||||||||||    
T  32470975 tcaaagtagttgaattccctcaaaacattacattccctcaaga---tttccacatccaaacacactctaagg 32471043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 40809436 - 40809504
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagg 91  Q
    ||||||| ||||||  ||||||||||||||||  |||||||||||  ||||||| |||||||||||||||    
T  40809436 aaagtagctgaattcactcaaaacattacattctctcaaaacatt-tccccatctaaacacactctaagg 40809504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 13243514 - 13243476
Alignment:
Q  31 gaatttcctcaaaacattacatttcctcaaaacattccc 69  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  13243514 gaattccctcaaaacattacattccctcaaaacattccc 13243476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 12479979 - 12479938
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttc 55  Q
    ||||| |||||||| ||||||||||||||||| |||||||||    
T  12479979 ttcacctcaaagtatttgaatttcctcaaaactttacatttc 12479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 32470942 - 32470882
Alignment:
Q  26 tagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||||| | ||||||||||||||| ||||||||||||  | ||||||||| |||||||    
T  32470942 tagttgaattccttcaaaacattacattccctcaaaacatt-tctccatccaaatacactct 32470882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 42069 - 41989
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaagggaat 95  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||| || |||| |||||||||||||| |||||    
T  42069 ttcacctcaaagtagttgaattccctcaaaacattacattccctcaaaacatt-cctccattcaaacacactctaaaggaat 41989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 42080 - 42137
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactct 87  Q
    |||||||  |||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  42080 ttgaattctctcaaaacattacattccctcaaaacgtt-cccccatccaaacacactct 42137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 83007 - 82945
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||    
T  83007 aaagtagttgaattccctcaaaacattacattccctcaaaacatt-cacccatccaaacacact 82945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 19786 - 19855
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| |||||||| |||||||| || ||||||||||||| |||||||||||  ||||||||||||||||||    
T  19786 ttcacctcaaagtatttgaattttcttaaaacattacattccctcaaaacat--cccccatccaaacacact 19855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 19269 - 19200
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||| ||||| || ||||||| ||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  19269 ttcacctcaaaatatttgaatt-cctcaaaacattacattccctcaaaatact-cccccatccaaacacact 19200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 4514 - 4570
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  4514 ttgaatttcctcaaaacattatattccctcaaaacatt-ccctcatccaaacacactc 4570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 5158 - 5214
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactc 86  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||    
T  5158 ttgaatttcctcaaaacattatattccctcaaaacatt-ccctcatccaaacacactc 5214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 10958 - 10905
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattc 67  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  10958 ttcacgtcaaagtatttgaattccctcaaaacattacattcccttaaaacattc 10905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 4147 - 4093
Alignment:
Q  14 ttcacgtcaaagtagttgaatttcctcaaaacattacatttcctcaaaacattcc 68  Q
    ||||| |||||||| ||||||| |||||||||||||||||  |||||||||||||    
T  4147 ttcacctcaaagtatttgaattccctcaaaacattacattctctcaaaacattcc 4093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 2924 - 2864
Alignment:
Q  29 ttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacactctaag 90  Q
    ||||||| |||||||||||||||||  ||| |||||||| ||||||| ||||||||||||||    
T  2924 ttgaattccctcaaaacattacattctctcgaaacattc-ccccatctaaacacactctaag 2864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 56369 - 56429
Alignment:
Q  22 aaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacaca 83  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| ||| ||||||||||||    
T  56369 aaagtagttgaattccctcaaaacattactttccctcaaaatatt-ccctcatccaaacaca 56429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 56345 - 56307
Alignment:
Q  15 tcacgtcaaagtagttgaatttcctcaaaacattacatt 53  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  56345 tcacctcaaagtagttgaattccctcaaaacattacatt 56307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7216 - 7153
Alignment:
Q  21 caaagtagttgaatttcctcaaaacattacatttcctcaaaacattccccccatccaaacacact 85  Q
    ||||||| ||||||| ||| |||||| |||||| |||||||||||| || |||||||||||||||    
T  7216 caaagtatttgaattcccttaaaacaatacattccctcaaaacatt-cctccatccaaacacact 7153  T

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