View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_31 (Length: 359)
Name: NF20985_low_31
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 38712951 - 38712632
Alignment:
| Q |
21 |
tgcgcaagctgtaaaattgaagagaaaaggaaaagtgagtaaccgagaataagggcggtgcgaggggcggggcctttgaggttgcgaagagagaagagtg |
120 |
Q |
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| T |
38712951 |
tgcgcaagctgtaaaattgaagagaaaaggaaaagtgagtaaccgagaataagggcggtgcgaggggcggggcctttgaggttgcgaagagagaagagtg |
38712852 |
T |
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| Q |
121 |
ctctgaagcgttcggagattggctgggttgagtccaacagcaattcgcacaggaacttctccatctctgatgagcacgaagcgacgtcgtttagcgaatt |
220 |
Q |
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| T |
38712851 |
ctctgaagcgttcggagattggctgggttgagtccaacagcaactcgcacaggaacttctccatctctgatgagcacgaagcaacgtcgtttagcgaatt |
38712752 |
T |
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| Q |
221 |
cgcagacatagagcgattaacaaaaattgtgagaagagagtgtgggcttatgaagacggtggtgggtctgacggaggcgatcggcgagttcaggtgttag |
320 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712751 |
cgcagacatagagcgattaac-aaaattgtgagaagagagtgtgggcttatgaagacggtggtgggtctgacggaggcgatcggcgagttcaggtgttag |
38712653 |
T |
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| Q |
321 |
aaatatagttagggactcaaaact |
344 |
Q |
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| T |
38712652 |
a---atagttagggactcaaaact |
38712632 |
T |
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