View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_36 (Length: 330)
Name: NF20985_low_36
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 49 - 312
Target Start/End: Original strand, 50549029 - 50549282
Alignment:
| Q |
49 |
tccccaaagattatctctgttggtaattcgaggactagcataaactcctgtnnnnnnnnc-acatcttgttatcactctttaaagaaacagtcacagctt |
147 |
Q |
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| T |
50549029 |
tccccaaagattatctctgttggtaattcgaggactagcataaactcctgtaaaaaaaaccacatcttgttatcactctttaaagaaacagtcacagctt |
50549128 |
T |
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| Q |
148 |
ggaagtaagtgtccacaatatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcctcagagatggcacagag |
247 |
Q |
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| T |
50549129 |
ggaagtaagtgtccacaatatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcct-----------cagag |
50549217 |
T |
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| Q |
248 |
atggcacatttcacataccccaagccttgccataaattagcaactctagcaaattggcagtgggt |
312 |
Q |
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| T |
50549218 |
atggcacatttcacataccccaagccttgccagaaattagcaactctagcaaattggcagtgggt |
50549282 |
T |
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Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 19759588 - 19759452
Alignment:
| Q |
165 |
atatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgcctcgttgcctcagagatggcacagagatggcacatttcacata |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
19759588 |
atatcaatgacatagttacaattaattgattttaggatccatatacctccagcatgccccgttgccttagagatgg-----------cacatttcacata |
19759500 |
T |
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| Q |
265 |
ccccaagccttgccataaattagcaactctagcaaattggcagtgggt |
312 |
Q |
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| T |
19759499 |
ccccaagccttgccagaaattagcaactctagcaaattggcaatgggt |
19759452 |
T |
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