View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_37 (Length: 326)
Name: NF20985_low_37
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 36372220 - 36372519
Alignment:
| Q |
16 |
atatgcctccatatgttaataaagattttaattcaactgttcacggaatgatttctaatggcatcatgagaattcttgctaatatttctgagaaggctcc |
115 |
Q |
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| T |
36372220 |
atatgcctccatatgttaataaagattttaattcaactgttcatggaatgatttctaatggcatcatgagaattcttgctaatatttctgagaaggctcc |
36372319 |
T |
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| Q |
116 |
tgtagtgcctgatcaaattagacaagttgttattactttagaagagtttcatggtcaatttgtttggaaacattctacagaagatagtagcttaaatcag |
215 |
Q |
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| T |
36372320 |
tgtagtgcctgatcaaattagacaagttgttattactttagaagagtttcatggtcaatttgtttggaaacattctacagaaaatagtagcttaaatcag |
36372419 |
T |
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| Q |
216 |
taaagcatgcttacttgcatctcaagccacatgttaatctagtaaattgggctaagaagattttgtgtaacttcatcatctctccattacattccttcat |
315 |
Q |
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| T |
36372420 |
taaagcatgcttacttgcatctcaagccacatgttaatctagtaaattgggctaagaagattttgtgtaacttcatcatctctccattacattccttcat |
36372519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 278
Target Start/End: Original strand, 36367266 - 36367473
Alignment:
| Q |
60 |
ggaatgatttctaatggcatcatgagaattcttgctaatatttctgagaaggctcctgtagtgcctgatcaaattagacaagttgttattactttagaag |
159 |
Q |
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| T |
36367266 |
ggaatgatttctaatagcttcttgagagttcctgcttatatttctgtgacggctcctgtagtggctgatcaaattagacaggttgttgttactttagaag |
36367365 |
T |
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| Q |
160 |
agtttcatggtcaatttgtttggaaacattctacagaagatagtagcttaaatcagtaaagcatgcttacttgcatctcaagccacatgttaatctagta |
259 |
Q |
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| T |
36367366 |
agtt------tcaatttgttttcaaacattctac---agatggtagctt--ataaggaaagcatgtttacttgcatctcaagctacatgttaatctagta |
36367454 |
T |
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| Q |
260 |
aattgggctaagaagattt |
278 |
Q |
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|||||| |||||||||||| |
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| T |
36367455 |
aattggtctaagaagattt |
36367473 |
T |
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