View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_4 (Length: 666)
Name: NF20985_low_4
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 34040942 - 34041308
Alignment:
| Q |
20 |
caaagggcctatcaaagcccaaattcgacggtggtttcactaaggaaatatctgaaacggagcgtttagatagcatcaataactcaagtctacccttagc |
119 |
Q |
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| T |
34040942 |
caaagggcctatcaaagcccaaattcgacggtggtttcactaaggaaatatctgaaacggagcgtttagatagcatcaataactcaagtctacccttagc |
34041041 |
T |
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| Q |
120 |
atccacgttccttattccactggaacgtaccctccttggtaacgatgttttttcattttcgggctcaatcttaggtaaatctactaggaagtaaattttc |
219 |
Q |
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| T |
34041042 |
atccacgttccttattccactggaacgtaccctccttggtaacgatgttttttcattttcgggctcaatcttaggtaaatctactaggaagtaaattttc |
34041141 |
T |
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| Q |
220 |
ttgggcttgagttcttgatttggctctaagggttttgccctaagcccgaagtgttttactgcttgagaatcaagtaaaacatggttgggatagtttttga |
319 |
Q |
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| T |
34041142 |
ttgggcttgagttcttgatttggctctaagggttttgccctaagcccgaagtgttttactgcttgagaatcaagtaaaacatggttgggatagtttttga |
34041241 |
T |
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| Q |
320 |
caacttcgtttgatgttgttggagtttttactttgaaggtttctccatctatcttcataatcttagc |
386 |
Q |
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| T |
34041242 |
caacttcgtttgatgttgttggagtttttactttgaaggtttctccatctatcttcataatcttagc |
34041308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 523 - 654
Target Start/End: Original strand, 34041445 - 34041576
Alignment:
| Q |
523 |
tgtatttatatatattgggattgttatggtagtaagaactaacaagttagagggttgacacaatcaaatttgaattatgggatgtgcatgtgtgaatatg |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34041445 |
tgtatttatatatattgggattgttatggtagtaagaactaacaagttagagggttgacacaatcaaatttgaattatgggatgtgcatgtgtgaatatg |
34041544 |
T |
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| Q |
623 |
ttgaattttgatgaggtttccttatatatatt |
654 |
Q |
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| T |
34041545 |
ttgaattttgatgaggtttccttatatatatt |
34041576 |
T |
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