View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20985_low_42 (Length: 287)

Name: NF20985_low_42
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20985_low_42
NF20985_low_42
[»] chr6 (13 HSPs)
chr6 (58-278)||(22575005-22575230)
chr6 (1-47)||(27080794-27080840)
chr6 (1-47)||(7082982-7083028)
chr6 (1-47)||(27080688-27080734)
chr6 (1-44)||(20744163-20744206)
chr6 (1-47)||(788891-788937)
chr6 (5-47)||(4455586-4455628)
chr6 (1-47)||(9367426-9367472)
chr6 (1-47)||(10278478-10278524)
chr6 (1-47)||(12582219-12582265)
chr6 (1-43)||(13496141-13496183)
chr6 (1-47)||(15155760-15155806)
chr6 (2-47)||(9977083-9977128)
[»] chr7 (7 HSPs)
chr7 (1-47)||(3671849-3671895)
chr7 (4-47)||(5579721-5579764)
chr7 (1-47)||(37800177-37800223)
chr7 (1-46)||(19036093-19036138)
chr7 (1-46)||(20718498-20718543)
chr7 (2-47)||(21751616-21751661)
chr7 (1-45)||(19599170-19599214)
[»] chr8 (9 HSPs)
chr8 (1-47)||(29376926-29376972)
chr8 (1-47)||(42172233-42172279)
chr8 (5-47)||(7996969-7997011)
chr8 (1-47)||(12674855-12674901)
chr8 (1-47)||(18533694-18533740)
chr8 (1-46)||(11709011-11709056)
chr8 (1-46)||(23159466-23159511)
chr8 (1-46)||(27718885-27718930)
chr8 (2-46)||(24338195-24338239)
[»] chr4 (12 HSPs)
chr4 (1-47)||(38374982-38375028)
chr4 (1-47)||(47652081-47652127)
chr4 (2-47)||(8027387-8027432)
chr4 (4-47)||(17729454-17729497)
chr4 (1-47)||(11949753-11949799)
chr4 (1-47)||(21318243-21318289)
chr4 (1-47)||(24079830-24079876)
chr4 (1-47)||(37930837-37930883)
chr4 (1-46)||(19479468-19479513)
chr4 (1-46)||(22164260-22164305)
chr4 (1-46)||(22630351-22630396)
chr4 (2-43)||(43155105-43155146)
[»] chr3 (9 HSPs)
chr3 (1-47)||(32928578-32928624)
chr3 (1-36)||(52172788-52172823)
chr3 (1-47)||(10922298-10922344)
chr3 (5-47)||(14030725-14030767)
chr3 (1-47)||(25441490-25441536)
chr3 (1-47)||(31138442-31138487)
chr3 (1-47)||(32632346-32632392)
chr3 (1-46)||(34899122-34899167)
chr3 (1-46)||(37364420-37364465)
[»] chr1 (9 HSPs)
chr1 (1-47)||(42045362-42045408)
chr1 (2-47)||(5869790-5869835)
chr1 (1-47)||(1794621-1794667)
chr1 (1-47)||(16307674-16307720)
chr1 (1-47)||(29987102-29987148)
chr1 (1-47)||(32950751-32950797)
chr1 (1-47)||(43356460-43356506)
chr1 (2-47)||(3481587-3481632)
chr1 (1-46)||(5279361-5279406)
[»] chr2 (11 HSPs)
chr2 (2-47)||(10195652-10195697)
chr2 (3-47)||(15447704-15447748)
chr2 (1-47)||(9547399-9547445)
chr2 (1-47)||(11175810-11175856)
chr2 (1-47)||(17142855-17142901)
chr2 (1-47)||(23407008-23407054)
chr2 (1-47)||(24592836-24592882)
chr2 (1-47)||(29896284-29896330)
chr2 (1-47)||(31815877-31815923)
chr2 (1-47)||(34367994-34368039)
chr2 (1-38)||(22354942-22354979)
[»] chr5 (6 HSPs)
chr5 (2-45)||(16094083-16094126)
chr5 (1-47)||(6489032-6489078)
chr5 (1-47)||(15889436-15889482)
chr5 (1-38)||(1642359-1642396)
chr5 (3-44)||(24408522-24408563)
chr5 (2-47)||(39980534-39980579)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-47)||(53370-53416)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 22575230 - 22575005
Alignment:
Q  58 tccatcttaaaatcacgtcaagctaaagatgtacaagtagcaagtttgagttattaccacaaaaaagttgaaataacaatgatgatttagatagtaaaaa 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||    
T  22575230 tccatcttaaaatcacgtcaagctaaagatgtacaagtagcaagtttgagttattactaaaaaaaagttgaaataacaatgaagatttagagagtaaaaa 22575131  T
Q  158 agatgaaactgttacccagaccaataaaaatgtg-----gcatggtagtaatcttagcttgtgttcttaagtgtagaggttcataatagatttaaatttc 252  Q
    ||| ||||||||| ||||||||||||||||| ||     | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22575130 agacgaaactgttccccagaccaataaaaatatgacatagtatagtagtaatcttagtttgtgttcttaagtgtagaggttcataatagatttaaatttc 22575031  T
Q  253 tcaccatttataggcacgttaatttt 278  Q
    ||||||||||||||||||||||||||    
T  22575030 tcaccatttataggcacgttaatttt 22575005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27080840 - 27080794
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  27080840 caatgcataatatatgcaagctctggaattcaaaccccgaccaccac 27080794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7083028 - 7082982
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7083028 caatgcataatatatgcaagatctggagttcaaaccccagccaccac 7082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27080734 - 27080688
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||    
T  27080734 caatgcataatatatgcaagctctgggattcaaaccccgaccaccac 27080688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20744163 - 20744206
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccac 44  Q
    |||||||||||||||||||| |||||  ||||||||||||||||    
T  20744163 caatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 788891 - 788937
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||    
T  788891 caatgcataatatatgcaaggttcggagttcaaaccccgaccaccac 788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 4455628 - 4455586
Alignment:
Q  5 gcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  4455628 gcataatatatgcaaggtctggggttcaaaccccgaccaccac 4455586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9367426 - 9367472
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||||    
T  9367426 caatgcataaaatatgcaaggtctgggattcaaaccccgaccaccac 9367472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10278478 - 10278524
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||||| | ||| |||||| ||||||||    
T  10278478 caatgcataatatatgcaagatctgaagttcgaaccccaaccaccac 10278524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12582265 - 12582219
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||||||    
T  12582265 caatgcataaaatatgcaaggtctggagttcaaaccccggccaccac 12582219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13496141 - 13496183
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgacca 43  Q
    |||||||||||||||||||| || ||| |||||||||||||||    
T  13496141 caatgcataatatatgcaaggtccggagttcaaaccccgacca 13496183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15155760 - 15155806
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  |||||||| ||||||||||    
T  15155760 caatgcataatatatgcaaggtctggggttcaaaccacgaccaccac 15155806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 9977083 - 9977128
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||| |||||  ||||||||| |||||||||    
T  9977083 aatgcataatatatgcaaggtctggggttcaaaccctgaccaccac 9977128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3671849 - 3671895
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  3671849 caatgcataatatatgcaaggtctggagttcaaaccccgaccaccac 3671895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 5579721 - 5579764
Alignment:
Q  4 tgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  5579721 tgcataatatatgcaaggtctggggttcaaaccccgaccaccac 5579764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37800177 - 37800223
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||| ||||||| | || |||||||||||||||||||    
T  37800177 caatgcataatatacgcaagatttagaattcaaaccccgaccaccac 37800223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19036138 - 19036093
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||| ||||||||| |||||| ||||||||||| ||||||    
T  19036138 caatgcataaaatatgcaaggtctggagttcaaaccccggccacca 19036093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20718498 - 20718543
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||| ||||||||| |||||| ||||||||||| ||||||    
T  20718498 caatgcataaaatatgcaaggtctggagttcaaaccccggccacca 20718543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 21751661 - 21751616
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||| ||| |||||||| | |||||||||    
T  21751661 aatgcataatatatgcaagatttgggtttcaaactctgaccaccac 21751616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19599170 - 19599214
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacc 45  Q
    |||||||||||||||||||| || ||  |||||||||||||||||    
T  19599170 caatgcataatatatgcaaggtccggggttcaaaccccgaccacc 19599214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29376926 - 29376972
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||||    
T  29376926 caatgcgtaatatatgcaaggtctggagttcaaaccccgaccaccac 29376972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42172279 - 42172233
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  42172279 caatgcataatatatgcaagatccggagttcaaaccccaaccaccac 42172233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 7996969 - 7997011
Alignment:
Q  5 gcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  7996969 gcataatatatgcaaggtctggggttcaaaccccgaccaccac 7997011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12674901 - 12674855
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||| ||||||||||||||||| |||| |||||||| ||||||||||    
T  12674901 caatacataatatatgcaagatttggagttcaaacctcgaccaccac 12674855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18533694 - 18533740
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||| ||  |||||||||| ||||||||    
T  18533694 caatgcataatatatgcaagatccggggttcaaaccccaaccaccac 18533740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11709011 - 11709056
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||| || | | ||||||||||||||||||    
T  11709011 caatgcataatatatgcaaggtccgaagttcaaaccccgaccacca 11709056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23159466 - 23159511
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||    
T  23159466 caatgcataatatatgcaagattcggggttcaaaccccgaccacca 23159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27718930 - 27718885
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||| || ||| ||||||| ||||||||||    
T  27718930 caatgcataatatatgcaaggtccggagttcaaactccgaccacca 27718885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 24338239 - 24338195
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    ||||||||| ||||||||| |||| | ||||||||||||||||||    
T  24338239 aatgcataaaatatgcaaggtctgaagttcaaaccccgaccacca 24338195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38374982 - 38375028
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||    
T  38374982 caatgcataatatatgcaaggtctggagttcaaaccccggccaccac 38375028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47652081 - 47652127
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||    
T  47652081 caatgcatagtatatgcaagatctggagttcgaaccccgaccaccac 47652127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 8027432 - 8027387
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  8027432 aatgcataatatatgcaagatcgggggttcaaaccccgaccaccac 8027387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 17729454 - 17729497
Alignment:
Q  4 tgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  17729454 tgcataatatatgcaaggtctggggttcaaaccccgaccaccac 17729497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11949799 - 11949753
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| || ||  |||||||||||||||||||    
T  11949799 caatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 11949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21318289 - 21318243
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||    
T  21318289 caatgcataatatatgcaaggtctagggttcaaaccccgaccaccac 21318243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24079876 - 24079830
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||| ||||||||| || ||| |||||||||||||||||||    
T  24079876 caatgcataaaatatgcaaggtccggagttcaaaccccgaccaccac 24079830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37930883 - 37930837
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| ||||   |||||||||||||||||||    
T  37930883 caatgcataatatatgcaaggtctgaggttcaaaccccgaccaccac 37930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19479513 - 19479468
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||    
T  19479513 caatgcataatatatgcaaggtccggggttcaaaccccgaccacca 19479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22164305 - 22164260
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||    
T  22164305 caatgcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22630396 - 22630351
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||    
T  22630396 caatgcataatatatgcaaggtctgaggttcaaaccccgaccacca 22630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 43155105 - 43155146
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgacca 43  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  43155105 aatgcataatatatgcaagatctgaggttcaaaccccgacca 43155146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32928624 - 32928578
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||    
T  32928624 caatgcataatatatataagatctggagttcaaaccccgaccaccac 32928578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 52172823 - 52172788
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaacc 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  52172823 caatgcataatatatgcaagatctggagttcaaacc 52172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10922344 - 10922298
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  10922344 caatgcataatatatgcaagatccggggttcaaaccccgactaccac 10922298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 14030767 - 14030725
Alignment:
Q  5 gcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||| | |||| |||||||||||||||||||    
T  14030767 gcataatatatgcaaggtttggagttcaaaccccgaccaccac 14030725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25441536 - 25441490
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  ||||||||||| |||||||    
T  25441536 caatgcataatatatgcaaggtctggggttcaaaccccggccaccac 25441490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31138442 - 31138487
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||    
T  31138442 caatgcataatatatgcaagatctag-gttcaaaccccgaccaccac 31138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32632346 - 32632392
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||| || || |||| |||||||||||||||||||    
T  32632346 caatgcataatatatgtaaaatttggagttcaaaccccgaccaccac 32632392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34899122 - 34899167
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||    
T  34899122 caatgcataatatatgcaaggtccggggttcaaaccccgaccacca 34899167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37364465 - 37364420
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||| |||| ||||||||||| |||||| |||||||||||    
T  37364465 caatgcataaaatatacaagatctggagttcaaatcccgaccacca 37364420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42045408 - 42045362
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||    
T  42045408 caatgcataatatatgcaaggtctggagttcaaaccccggccaccac 42045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 5869790 - 5869835
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  5869790 aatgcataatatatgcaagattcggagttcaaaccccgaccaccac 5869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1794621 - 1794667
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||| ||  |||||||| ||||||||||    
T  1794621 caatgcataatatatgcaagatccggggttcaaacctcgaccaccac 1794667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16307674 - 16307720
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||   ||||||||||||||||||    
T  16307674 caatgcataatatatgcaaggtctggggatcaaaccccgaccaccac 16307720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29987148 - 29987102
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||| ||| |||||| ||||||||    
T  29987148 caatgcataatatatgcaaggtctggagttcgaaccccaaccaccac 29987102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32950797 - 32950751
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| || ||| |||||||| ||||||||||    
T  32950797 caatgcataatatatgcaaggtccggagttcaaacctcgaccaccac 32950751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43356460 - 43356506
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||||    
T  43356460 caatgcataatatatgtaaggtttggagttcaaaccccgaccaccac 43356506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 3481587 - 3481632
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||| |||||  ||||||||||| |||||||    
T  3481587 aatgcataatatatgcaaggtctggggttcaaaccccggccaccac 3481632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5279406 - 5279361
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccacca 46  Q
    |||||||||||||||||||  |||||| |||||||| |||||||||    
T  5279406 caatgcataatatatgcaatgtctggagttcaaacctcgaccacca 5279361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 10195697 - 10195652
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||    
T  10195697 aatgcataatatatgcaagatctggagttcaaaccctgatcaccac 10195652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 15447748 - 15447704
Alignment:
Q  3 atgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||    
T  15447748 atgcataatatatgcaaggtctggagttcaaaccccggccaccac 15447704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9547445 - 9547399
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| | |||  |||||||||||||||||||    
T  9547445 caatgcataatatatgcaaggtttggggttcaaaccccgaccaccac 9547399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11175810 - 11175856
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||||||||||||||  ||||||| ||| |||||||    
T  11175810 caatgcataatatatgcaagatctggggttcaaactccggccaccac 11175856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17142855 - 17142901
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||| |||||||||||||  |||||| |||||||||||||||||||    
T  17142855 caatgtataatatatgcaaagtctggagttcaaaccccgaccaccac 17142901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23407054 - 23407008
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  ||||||||| |||||||||    
T  23407054 caatgcataatatatgcaaggtctggggttcaaaccctgaccaccac 23407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24592882 - 24592836
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  ||||||||||| |||||||    
T  24592882 caatgcataatatatgcaaggtctggggttcaaaccccggccaccac 24592836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29896330 - 29896284
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| | |||  |||||||||||||||||||    
T  29896330 caatgcataatatatgcaaggtttggggttcaaaccccgaccaccac 29896284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31815923 - 31815877
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| || ||  |||||||||||||||||||    
T  31815923 caatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34367994 - 34368039
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||    
T  34367994 caatgcataatatatacaagatct-gagttcaaaccccgaccaccac 34368039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22354979 - 22354942
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaacccc 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  22354979 caatgcataatatatgcaagatctggtgttcaaacccc 22354942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16094083 - 16094126
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccacc 45  Q
    ||||||||||||||| |||||||||  |||||||||||||||||    
T  16094083 aatgcataatatatgtaagatctggggttcaaaccccgaccacc 16094126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6489032 - 6489078
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| |||||  ||||||||||| |||||||    
T  6489032 caatgcataatatatgcaaggtctggggttcaaaccccggccaccac 6489078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15889436 - 15889482
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||||||||||||| ||| |  |||||||||||||||||||    
T  15889436 caatgcataatatatgcaaggtctagggttcaaaccccgaccaccac 15889482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1642359 - 1642396
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaacccc 38  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  1642359 caatgcataatatatgcaagatctggagttcgaacccc 1642396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 24408522 - 24408563
Alignment:
Q  3 atgcataatatatgcaagatctggatttcaaaccccgaccac 44  Q
    |||||||||||||||||| |||||  ||||||||||||||||    
T  24408522 atgcataatatatgcaaggtctggggttcaaaccccgaccac 24408563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 39980534 - 39980579
Alignment:
Q  2 aatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    ||||||||| ||||||||| || ||| |||||||||||||||||||    
T  39980534 aatgcataaaatatgcaaggtccggagttcaaaccccgaccaccac 39980579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 53416 - 53370
Alignment:
Q  1 caatgcataatatatgcaagatctggatttcaaaccccgaccaccac 47  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||||    
T  53416 caatgcataaaatatgcaaggtctggggttcaaaccccgaccaccac 53370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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