View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_44 (Length: 276)
Name: NF20985_low_44
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 27066833 - 27067077
Alignment:
| Q |
11 |
cataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066833 |
cataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgag |
27066932 |
T |
|
| Q |
111 |
ttccgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066933 |
ttccgggaagcagaagagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtg |
27067032 |
T |
|
| Q |
211 |
gcgctgagtggtgaggccttagagaggatgaaagatggttttggt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27067033 |
gcgctgagtggtgaggccttagagaggatgaaagatggttttggt |
27067077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 27080633 - 27080761
Alignment:
| Q |
127 |
agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg |
226 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| | || | ||||| |||||||||||||||||||| | |
|
|
| T |
27080633 |
agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg |
27080732 |
T |
|
| Q |
227 |
ccttagagaggatgaaagatggttttggt |
255 |
Q |
| |
|
||||| ||||||||| | |||||||||| |
|
|
| T |
27080733 |
ccttattgaggatgaatgttggttttggt |
27080761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 27053747 - 27053887
Alignment:
| Q |
114 |
cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg |
213 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| ||| || | || || ||||||||| |
|
|
| T |
27053747 |
cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg |
27053846 |
T |
|
| Q |
214 |
ctgagtggtgaggccttagagaggatgaaagatggttttgg |
254 |
Q |
| |
|
|| |||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
27053847 |
ctaagtggtgacgccttggagaggatgaaggatggttttgg |
27053887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University