View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_45 (Length: 269)
Name: NF20985_low_45
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 1435711 - 1435472
Alignment:
| Q |
19 |
acgaagaagaagaaagttcctaaatctcgtcgaaacatttgtgtctctgtcatcgttcgtgcatgaaatttcggttcttctttcttacacaaagggtaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1435711 |
acgaagaagaagaaagttcctaaatctcgtcgaaacatttgtgtctctgtcatcgttcgtgcatgaaatttcggttcttctttcttacacaaagggtaac |
1435612 |
T |
|
| Q |
119 |
aacaaattcaacaccgtgttgaacaagataaattcccaaacaagaatccaca-aaaagtgattatc-----ttcaattcattgcattcaaacaacaagac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1435611 |
aacaaattcaacaccgtgttgaacaagataaattcccaaacaagaatccacaaaaaagtgattatcttcaattcaattcattgcattcaaacaacaagac |
1435512 |
T |
|
| Q |
213 |
acaatccaccgtttccttttccattctttctgcaatcttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1435511 |
acaatccaccgtttccttttccattccttctgcaatcttt |
1435472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University