View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_52 (Length: 231)
Name: NF20985_low_52
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 47580162 - 47580369
Alignment:
| Q |
17 |
cacttattgctatggttttcatctctcaggcaagttaattagtgatttaaaatccattctttttcttaaattctggtactgaatgtgtttattgttttat |
116 |
Q |
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| T |
47580162 |
cacttattgttatggttttcatctctcaggcaagttaattagtgatttaaaatccattctatttcttaaattctggtactgaatgtgtttattgttttat |
47580261 |
T |
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| Q |
117 |
atgatgctgcagtatcttcattgttatataagcaccaagaagcctacatttgaccgatttgcagttctgttttccattgcaagtgcatggttatttgcac |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47580262 |
atgatgctgcagtatcttcatcgttatataagcaccaagaagcctacatttgaccgatttgcagttctgtttaccattgcaagtgcatggttatttgcac |
47580361 |
T |
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| Q |
217 |
aggttctg |
224 |
Q |
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|| ||||| |
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| T |
47580362 |
agcttctg |
47580369 |
T |
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