View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_53 (Length: 226)
Name: NF20985_low_53
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 48220041 - 48219977
Alignment:
| Q |
1 |
gcaagcaatgatttttctttggatgagttatcctcttcttctatatgatgtaatacacatatttg |
65 |
Q |
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| T |
48220041 |
gcaagcaatgatttttctttggatgagttatcctcttcttctatatgatgtaatacacatatttg |
48219977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 48219894 - 48219832
Alignment:
| Q |
148 |
gtaagtgatttatatttttgtgcgagtttgttcaaacaacctgcctagctaaatgattgtgat |
210 |
Q |
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| T |
48219894 |
gtaagtgatttatatttttgtgcgagtgtgttcaaacaacctgcctagctaaatgattgtgat |
48219832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22641090 - 22641036
Alignment:
| Q |
1 |
gcaagcaatgatttttctttggatgagttatcctcttcttctatatgatgtaata |
55 |
Q |
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| T |
22641090 |
gcaagcaatgattttcctttagatgagttatcctcttcttctatatgatgtaata |
22641036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22645935 - 22645881
Alignment:
| Q |
1 |
gcaagcaatgatttttctttggatgagttatcctcttcttctatatgatgtaata |
55 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
22645935 |
gcaagcaatgattttcctttagatgagttatcctcttcttctatatgatgtaata |
22645881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13813904 - 13813959
Alignment:
| Q |
1 |
gcaagcaatgatttttctttggatgagttatcctcttcttctatatgatgtaatacaca |
59 |
Q |
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| T |
13813904 |
gcaagcaatgatttgtccttagatgggttatc---ttcttctatatgatgtaatacaca |
13813959 |
T |
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