View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20985_low_6 (Length: 611)
Name: NF20985_low_6
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 146 - 600
Target Start/End: Complemental strand, 9424125 - 9423671
Alignment:
| Q |
146 |
ataataagtgaaattggtgcggtataagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9424125 |
ataataagtgaaattggtgcggtataagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattattg |
9424026 |
T |
|
| Q |
246 |
taattgattgattgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9424025 |
taattgattgattgcacaaaatattcagcatcaaacagcttcaatactgtaacgttgtttacgcaattcaactcgtacaaattgttgccacagtggtctg |
9423926 |
T |
|
| Q |
346 |
ggtcgtgttttagtcggaatggatgagttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagta |
445 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9423925 |
ggtcgtgttttagtcggaatggatgatttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagta |
9423826 |
T |
|
| Q |
446 |
aagaaacattatcacacatcttgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaaggtgctagttttgttttggtgctggag |
545 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9423825 |
aagaaaaactatcacacatcttgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaaggtgctagttttgttttggtgctggag |
9423726 |
T |
|
| Q |
546 |
tatagtatagttttaaaggatttacatggaaaaacttattatgtaactttcctat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9423725 |
tatagtatagttttaaaggatttacatggaaaaacttattatgtaactttcctat |
9423671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 9417766 - 9418105
Alignment:
| Q |
17 |
acttgtacacttcaggtaaattacaggccaagataaatccgaggaaataggtgaattcgatcgatttaagctgtataggtatgaattattttctttgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9417766 |
acttgtacacttcaggtaaattacaggccaagataaatccgaggaaataggtgaattcgatcgagttaagctgtataggtatgaattattttctttgtaa |
9417865 |
T |
|
| Q |
117 |
atgaagtcggtgtagcttcctgagttaacataataagtgaaattggtgcggtataagaagaagcgagggagagaggagcaattgttgggttgaatattag |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9417866 |
atgaactcggtgtagcttcctgagttaacataataagtgaaattggtgcggtatatgaagaagcgagggagagaggagcaattgttgggttgaatattag |
9417965 |
T |
|
| Q |
217 |
ggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaa |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9417966 |
ggtcaacaactcgtattgtgtaattcttgtaattgattgattgcacaaaatattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaa |
9418065 |
T |
|
| Q |
317 |
ctcgtacaaattgttgccacagtggtctgggtcgtgtttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9418066 |
ctcgtacaaattgttgccacagtggtctgggtcgtgtttt |
9418105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 167 - 531
Target Start/End: Complemental strand, 9444337 - 9443973
Alignment:
| Q |
167 |
gtataagaagaagcgagggagagaggagcaattgttgggttgaatattagggtcaacaactcgtattgtgtaattgttgtaattgattgattgcacaaaa |
266 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9444337 |
gtataagaagaagtgagggagagaggagcagttggtaggttgaatgtttgggtcaacaactcgtattgtgtaattgttgtaattgattgattgcaccaaa |
9444238 |
T |
|
| Q |
267 |
tattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444237 |
tattcagcatcatacagcttcaatactgtaacgttgtttagacaattcaactcgtacaaattgttgccacagtggtctgggtcgtgttttagtcggaatg |
9444138 |
T |
|
| Q |
367 |
gatgagttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaacattatcacacatct |
466 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
9444137 |
gataagttatgttggaaatttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaatactatcacacctct |
9444038 |
T |
|
| Q |
467 |
tgcataactggtttttcgtccaaaaatagaggttgaaaccattttcacttaaggtgctagttttg |
531 |
Q |
| |
|
|||||| |||| |||| |||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
9444037 |
tgcatatctggcttttactccaaagttagaggttgaaaccattttcactcactgtgctagttttg |
9443973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 385 - 600
Target Start/End: Original strand, 9418102 - 9418317
Alignment:
| Q |
385 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaacattatcacacatcttgcataactggtttttcg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
9418102 |
tttttccacaggaagaagaacaaggttgtgaataagttttgtgtggaagtagaaacaagtaaagaaatactatcacacatcttgcataactggtttttcg |
9418201 |
T |
|
| Q |
485 |
tccaaaaatagaggttgaaaccattttcacttaaggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttat |
584 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9418202 |
tccaaaaatagtggttgaaaccattttcacttaaggtgctagttttgttttggtgctggagtatagtatagttttaaaggatttacatggaaaaacttat |
9418301 |
T |
|
| Q |
585 |
tatgtaactttcctat |
600 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9418302 |
tatgtaactttcctat |
9418317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 9093297 - 9093247
Alignment:
| Q |
344 |
tgggtcgtgttttagtcggaatggatgagttatgttggaaatttttccaca |
394 |
Q |
| |
|
|||||| | ||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
9093297 |
tgggtcattttttagtcgaaatggataagttatgttggaaattttgccaca |
9093247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 9444463 - 9444425
Alignment:
| Q |
17 |
acttgtacacttcaggtaaattacaggccaagataaatc |
55 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9444463 |
acttgtacacttcaggtaaattacaggcctggataaatc |
9444425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University