View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_8 (Length: 544)
Name: NF20985_low_8
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 25650122 - 25650057
Alignment:
| Q |
35 |
accctgcaaattaggtgacgactcagtgcagtttcaaaacaaaatagagggaaaaaatatttcaaa |
100 |
Q |
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| T |
25650122 |
accccgcaaatcaggtgacgactcagtgcagtttcaaaacaaaatagagggaaaaaatatttcaaa |
25650057 |
T |
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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 25901649 - 25901541
Alignment:
| Q |
94 |
tttcaaatgtaaatagtttaaatacaatgtacattgaacaacaacaacatacataaactacattaat---tatatataatacataagttacattcaagtt |
190 |
Q |
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| T |
25901649 |
tttcacatgtaaatagtctaactacaatgtacattgaacaacaacgacatttataaactacactagtatatatatataatgcataagttaccttcaagtt |
25901550 |
T |
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| Q |
191 |
gatttgaat |
199 |
Q |
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||||||||| |
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| T |
25901549 |
gatttgaat |
25901541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 25900482 - 25900377
Alignment:
| Q |
94 |
tttcaaatgtaaatagtttaaatacaatgtacattgaacaacaacaacatacataaactacattaattatatataatacataagttacattcaagttgat |
193 |
Q |
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||||| ||||||||||| ||| ||||| ||| ||| ||||||||| | || || | ||||| || ||||||||||| |||||||||| ||||||||||| |
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| T |
25900482 |
tttcacatgtaaatagtctaactacaacgtatattaaacaacaaccatattaattacctacactagttatatataattcataagttaccttcaagttgat |
25900383 |
T |
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| Q |
194 |
ttgaat |
199 |
Q |
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|||||| |
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| T |
25900382 |
ttgaat |
25900377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 19744857 - 19744916
Alignment:
| Q |
42 |
aaattaggtgacgactcagtgcagtttcaaaacaaaatagagggaaa-aaatatttcaaa |
100 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
19744857 |
aaatcaggtgacgactcagtgcagttttaaaacaaaatagagggaaagaaatatttcaaa |
19744916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 9018712 - 9018780
Alignment:
| Q |
35 |
accctgcaaattaggtgacgactcagtgc--agtttcaaaacaaaatagaggg-aaaaaatatttcaaa |
100 |
Q |
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|||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
9018712 |
accccgcaaatcaggtgacgactcagtgtgtagtttcaaaacaaaatagagggaaaaaaatatttcaaa |
9018780 |
T |
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