View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20985_low_9 (Length: 540)
Name: NF20985_low_9
Description: NF20985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20985_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 43553809 - 43554338
Alignment:
| Q |
18 |
aggtgaggataatcaactgaaatttaaccgacaaaatagttgacaagcttccgaagcttcttgatttaagttgagtttgggatttgcattaattgaggaa |
117 |
Q |
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| T |
43553809 |
aggtgaggataatcaactgaaatttaaccgacaaaatagttgacaatcttccaaagcttcttgatttaagttgagtttgggatttgcattaattgaggaa |
43553908 |
T |
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| Q |
118 |
gagggaaaaagtggnnnnnnntaaa----caaacaagtgtagcatgtttgattcaatttttggaggaggtagaattgattccaattttttcatattcaaa |
213 |
Q |
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| T |
43553909 |
gagggaaaaagtgaaaaaaaataaataaacaaacaagtgtagcatgtttgattcaatttttggaggaggtagaattgattccaattttttcatattcaaa |
43554008 |
T |
|
| Q |
214 |
ttgaattttgttgattttgtccgtaaaacattctggcttaaaactcatgaatatattcatgtaattaaatgggtttagaagtcatggtttgaccgtgtta |
313 |
Q |
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| T |
43554009 |
ttgaattttgttgattttgtccataaaacattctggcttaaaactcatgaatatattcatgtaattaaatgagtttagaagtcatggtttgactgtgtta |
43554108 |
T |
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| Q |
314 |
atgttgtacttgattcgaaaatagtggtcgattac-ttcataaaagaagtaacgatatcaataattttggtgttgtgttgtctgcaatggtggagtccct |
412 |
Q |
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| T |
43554109 |
atgttgtacttgattcgaaaatagtggtcgattactttcataaaagaagtaacgatatcaataattttggtgttgtgttgtctgcaatggtggagtccct |
43554208 |
T |
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| Q |
413 |
ctagggcttaggtgggccaccgcatatgctacc----------nnnnnnnttataaaggaaattattaaaatatttttgactttcaaataaaattacact |
502 |
Q |
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| T |
43554209 |
ctagggcttaggtgggccaccacatatgctaccaaaaaaatttaaaaaaattataaaggaaattattaaaatatttttgactttcaaataaaattacatt |
43554308 |
T |
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| Q |
503 |
gtgatttatgaaaatagtcttcttcatctc |
532 |
Q |
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| T |
43554309 |
gtgatttatgaaaatattcttcttcatctc |
43554338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 6108299 - 6108333
Alignment:
| Q |
461 |
gaaattattaaaatatttttgactttcaaataaaa |
495 |
Q |
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| T |
6108299 |
gaaattattaaaatatttttgacttttaaataaaa |
6108333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 506
Target Start/End: Original strand, 16519695 - 16519739
Alignment:
| Q |
462 |
aaattattaaaatatttttgactttcaaataaaattacactgtga |
506 |
Q |
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| T |
16519695 |
aaattatgaaaatatctttgacttttaaataaaattacattgtga |
16519739 |
T |
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