View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20986_high_1 (Length: 582)
Name: NF20986_high_1
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20986_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Complemental strand, 28938912 - 28938366
Alignment:
| Q |
19 |
actagagagggcaacaagggaaacatcagccatacaattatctgcagaacataatgttaaccttgaaagagtgagagatgaacttagattaagacaccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938912 |
actagagagggcaacaagggaaacatcagccatacaattatctgcagaacataatgttaaccttgaaagagtgagagatgaacttagattaagacaccct |
28938813 |
T |
|
| Q |
119 |
tatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtacaaaatcggttaaatatatttttagtccgtaannnnn |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938812 |
tatgattcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtacaaaatcggttaaatatatttttagtccgtaattttt |
28938713 |
T |
|
| Q |
219 |
nnnnataattcctgttattagtctttgtatccacttcagtccttaaaatttacaaaactacatgctttttgcaggtttcgcgatcgatcggtgatgcata |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938712 |
ttt-ataattcctgttattagtctttgtatccacctcagtccttaaaatttacaaaactacatgctttttgcaggtttcgcgatcgatcggtgatgcata |
28938614 |
T |
|
| Q |
319 |
tctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagacttgctgaaacatttttcaaaccaattctcagctgtgagccatcaatttca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938613 |
tctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagactcgctgaaacatttttcaaaccaattctcagctgtgagccatcaatttca |
28938514 |
T |
|
| Q |
419 |
acacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagcttagcaaccaagaggctgttaacatagtcagcaaca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938513 |
acacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagcttagcaaccaagaggctgttaacatagtcagcaaca |
28938414 |
T |
|
| Q |
519 |
atccacctaatgttaggctccattttatttttatgattcgatgttatt |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28938413 |
atccacctaatgttaggctccattttatttttatgattctatgttatt |
28938366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 52554954 - 52555018
Alignment:
| Q |
443 |
caatttctcatatttgcttcggatggattatgggagcagcttagcaaccaagaggctgttaacat |
507 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||| | ||||| ||||| |||||| |||| |
|
|
| T |
52554954 |
caatttcttatatttgcatcagatggattatgggagcacttgagcaatcaagaagctgttgacat |
52555018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 284 - 524
Target Start/End: Complemental strand, 40325951 - 40325711
Alignment:
| Q |
284 |
tttttgcaggtttcgcgatcgatcggtgatgcatatctgaagaaagcagaattcaatagggagcctctaccatcaaagttcagacttgctgaaacatttt |
383 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||||||||| || || |||||||| ||| ||||| ||||| ||||||| |||| |
|
|
| T |
40325951 |
tttttgcaggtttcaagatccataggtgatgcatatctgaagaaagcagaatttaacagagagcctctgccacagaagtttagactgcctgaaacctttt |
40325852 |
T |
|
| Q |
384 |
tcaaaccaattctcagctgtgagccatcaatttcaacacataaacttcatcctgatgaccaatttctcatatttgcttcggatggattatgggagcagct |
483 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||| |||||| | || ||||| || ||||||||||| |||||||| ||||| ||||||||||| || |
|
|
| T |
40325851 |
tcaagccaattctcagtagtgagccatcaatatcagttcataaaatccaacctgaagatcaatttctcatctttgcttctgatggtttatgggagcatct |
40325752 |
T |
|
| Q |
484 |
tagcaaccaagaggctgttaacatagtcagcaacaatccac |
524 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||||| |
|
|
| T |
40325751 |
tagcaaccaagtagctgtgaatatcgttagcaacaatccac |
40325711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 40326672 - 40326514
Alignment:
| Q |
25 |
gagggcaacaagggaaacatcagccatacaattatctgcagaacataatgttaaccttgaaagagtgagagatgaacttagattaagacacccttatgat |
124 |
Q |
| |
|
||||| |||||||||||||| |||| | || |||||| ||||||| |||||||| | |||| | ||||||||| || | | || ||||| |||||| |
|
|
| T |
40326672 |
gaggggaacaagggaaacattagccgttcagttatctacagaacacaatgttaatatagaaactgagagagatgatgttcggtcaaagcacccctatgat |
40326573 |
T |
|
| Q |
125 |
tcacaaattgtggttatgagacacaatgtttggcgcgtcaaaggcctcatacaggtaca |
183 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
40326572 |
tcacagattgtggttatgaaacactcagtttggcgtgtgaaaggcatcatacaggtaca |
40326514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University