View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20986_high_10 (Length: 214)

Name: NF20986_high_10
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20986_high_10
NF20986_high_10
[»] chr7 (23 HSPs)
chr7 (49-214)||(21881756-21881921)
chr7 (1-46)||(8080439-8080484)
chr7 (1-46)||(40957706-40957751)
chr7 (1-47)||(3434560-3434606)
chr7 (1-47)||(36361969-36362015)
chr7 (4-46)||(38837216-38837258)
chr7 (1-46)||(7389388-7389433)
chr7 (1-46)||(11044187-11044232)
chr7 (1-45)||(35137533-35137577)
chr7 (1-47)||(36362024-36362070)
chr7 (1-45)||(4999570-4999614)
chr7 (1-45)||(19329842-19329886)
chr7 (1-45)||(38267040-38267084)
chr7 (3-47)||(46033859-46033903)
chr7 (8-46)||(10343626-10343664)
chr7 (1-47)||(22343359-22343405)
chr7 (1-47)||(41915739-41915785)
chr7 (9-42)||(3783998-3784031)
chr7 (1-46)||(19436243-19436288)
chr7 (3-44)||(32951551-32951592)
chr7 (1-46)||(38044196-38044241)
chr7 (1-45)||(21234401-21234445)
chr7 (1-45)||(32564482-32564526)
[»] chr2 (23 HSPs)
chr2 (1-47)||(5574544-5574590)
chr2 (1-50)||(7465791-7465840)
chr2 (1-46)||(9058479-9058524)
chr2 (1-46)||(30915462-30915507)
chr2 (1-46)||(33436156-33436201)
chr2 (1-47)||(28863453-28863499)
chr2 (1-42)||(19930876-19930917)
chr2 (1-45)||(17473020-17473064)
chr2 (1-45)||(27864704-27864748)
chr2 (1-45)||(40701478-40701522)
chr2 (7-45)||(28381717-28381755)
chr2 (1-47)||(32505704-32505750)
chr2 (1-46)||(10249438-10249483)
chr2 (1-46)||(20700814-20700859)
chr2 (1-46)||(38882870-38882914)
chr2 (1-45)||(4060685-4060729)
chr2 (1-45)||(13438343-13438387)
chr2 (1-45)||(40613958-40614002)
chr2 (3-46)||(38273200-38273243)
chr2 (1-47)||(33436209-33436255)
chr2 (1-49)||(2533120-2533168)
chr2 (6-46)||(26891565-26891605)
chr2 (1-49)||(41575133-41575181)
[»] chr8 (18 HSPs)
chr8 (1-45)||(15197333-15197377)
chr8 (1-44)||(5957831-5957874)
chr8 (1-45)||(504177-504221)
chr8 (1-45)||(1179996-1180040)
chr8 (1-45)||(12831047-12831091)
chr8 (1-45)||(34012352-34012396)
chr8 (1-45)||(40423999-40424043)
chr8 (3-46)||(4854921-4854964)
chr8 (6-49)||(9122191-9122234)
chr8 (1-47)||(37038477-37038523)
chr8 (1-46)||(14547921-14547966)
chr8 (1-45)||(15048237-15048281)
chr8 (1-45)||(20074990-20075034)
chr8 (1-45)||(23122653-23122697)
chr8 (1-45)||(30479530-30479574)
chr8 (3-47)||(44507145-44507189)
chr8 (1-46)||(16383376-16383421)
chr8 (1-46)||(34307215-34307260)
[»] chr5 (18 HSPs)
chr5 (1-45)||(14831814-14831858)
chr5 (1-49)||(2740270-2740318)
chr5 (1-44)||(36875659-36875702)
chr5 (3-45)||(40145407-40145449)
chr5 (1-42)||(18520940-18520981)
chr5 (1-46)||(36732998-36733043)
chr5 (1-45)||(33149694-33149738)
chr5 (1-45)||(35785199-35785243)
chr5 (1-45)||(28177775-28177819)
chr5 (1-45)||(42414358-42414402)
chr5 (3-45)||(26720516-26720558)
chr5 (3-45)||(26990265-26990307)
chr5 (1-46)||(3921321-3921366)
chr5 (9-46)||(13811651-13811688)
chr5 (8-45)||(33825387-33825424)
chr5 (3-48)||(41470474-41470519)
chr5 (1-49)||(6679694-6679742)
chr5 (9-45)||(35943956-35943992)
[»] chr3 (21 HSPs)
chr3 (1-46)||(11095409-11095454)
chr3 (1-46)||(49607413-49607458)
chr3 (1-45)||(53982011-53982055)
chr3 (1-46)||(54868951-54868996)
chr3 (1-45)||(33644200-33644244)
chr3 (1-40)||(52629305-52629344)
chr3 (1-46)||(27714947-27714992)
chr3 (1-46)||(33118907-33118952)
chr3 (1-46)||(36707480-36707525)
chr3 (1-45)||(8076393-8076437)
chr3 (1-45)||(14623895-14623939)
chr3 (7-47)||(17470403-17470443)
chr3 (1-49)||(24700010-24700058)
chr3 (1-41)||(48587147-48587187)
chr3 (1-44)||(31456690-31456733)
chr3 (1-47)||(8956760-8956806)
chr3 (3-45)||(26141590-26141632)
chr3 (1-47)||(35536624-35536670)
chr3 (4-45)||(45058611-45058652)
chr3 (4-40)||(26754700-26754736)
chr3 (1-41)||(30801789-30801829)
[»] chr1 (19 HSPs)
chr1 (1-46)||(2581914-2581959)
chr1 (1-45)||(9474932-9474976)
chr1 (1-50)||(51898739-51898788)
chr1 (1-45)||(3000319-3000363)
chr1 (1-45)||(47452376-47452420)
chr1 (1-45)||(48716338-48716382)
chr1 (7-46)||(38632383-38632422)
chr1 (2-48)||(50630455-50630501)
chr1 (1-46)||(38595153-38595198)
chr1 (1-45)||(27564791-27564835)
chr1 (3-46)||(32813246-32813289)
chr1 (1-47)||(41758803-41758849)
chr1 (1-46)||(8346444-8346489)
chr1 (1-46)||(23597147-23597192)
chr1 (7-40)||(34340100-34340133)
chr1 (1-45)||(43132-43176)
chr1 (4-44)||(11152437-11152476)
chr1 (1-45)||(37649198-37649242)
chr1 (1-45)||(50591056-50591100)
[»] chr4 (19 HSPs)
chr4 (1-45)||(6034044-6034088)
chr4 (1-45)||(11511518-11511562)
chr4 (1-48)||(29234301-29234348)
chr4 (1-46)||(480503-480548)
chr4 (1-46)||(29239885-29239930)
chr4 (1-46)||(48183105-48183150)
chr4 (1-46)||(50052484-50052529)
chr4 (1-45)||(41236347-41236391)
chr4 (4-46)||(42044426-42044468)
chr4 (4-50)||(44536804-44536850)
chr4 (1-46)||(32766957-32767002)
chr4 (1-45)||(3481654-3481698)
chr4 (1-45)||(50526227-50526271)
chr4 (1-45)||(54473589-54473633)
chr4 (1-47)||(50813948-50813994)
chr4 (1-46)||(19670772-19670817)
chr4 (1-46)||(24995163-24995208)
chr4 (1-46)||(55475190-55475235)
chr4 (1-45)||(40574779-40574823)
[»] chr6 (13 HSPs)
chr6 (1-42)||(22880714-22880755)
chr6 (1-45)||(32869678-32869722)
chr6 (8-46)||(6209528-6209566)
chr6 (1-47)||(11427614-11427662)
chr6 (1-46)||(31110815-31110860)
chr6 (9-45)||(17598554-17598590)
chr6 (1-45)||(31109456-31109500)
chr6 (1-46)||(15990098-15990143)
chr6 (1-46)||(30341416-30341461)
chr6 (1-45)||(15508080-15508124)
chr6 (11-47)||(22422084-22422120)
chr6 (1-45)||(31953086-31953130)
chr6 (3-47)||(31976246-31976290)
[»] scaffold1268 (1 HSPs)
scaffold1268 (3-45)||(987-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (3-45)||(987-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-46)||(10165-10210)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 21881921 - 21881756
Alignment:
Q  49 ataaagtgatcgttttgtaattaaaattaatgacagaaaacattttcttaaatcaattagggcttaaaaatttcacaattatgcatacctattcgagaac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21881921 ataaagtgatcgttttgtaattaaaattaatgacagaaaacattttcttaaatcaattagggcttaaaaatttcacaattatgcatacctattcgagaac 21881822  T
Q  149 tttcgtgtgttgtagctaactgagagaagacctttttccagtttggtctagcaaaatgagttctta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21881821 tttcgtgtgttgtagctaactgagagaagacctttttccagtttggtctagcaaaatgagttctta 21881756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8080439 - 8080484
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  8080439 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40957751 - 40957706
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  40957751 tcaaagagtgtattgccacctaagagtgtctatgtatcattactct 40957706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3434606 - 3434560
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  3434606 tcaaagggtgtattgccacctaaggatgtctatgtatcattactcta 3434560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36361969 - 36362015
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  36361969 tcaaaggatgtattgccacctaagggtgtctatgtatcattactcta 36362015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 38837258 - 38837216
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38837258 aagggtgtattgccacctaagggtgtctatgtatcattactct 38837216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7389433 - 7389388
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  7389433 tcaaagagtgtattgccacctaagggtgtctatgtatcattactct 7389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11044232 - 11044187
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  11044232 tcaaaggatgtattgccacctaagggtgtctatgtatcattactct 11044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35137577 - 35137533
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  35137577 tcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36362070 - 36362024
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  36362070 tcaaaggatgtattaccacctaagggtgtctatgtatcattactcta 36362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4999570 - 4999614
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||| ||||| ||||||||||||||||||||    
T  4999570 tcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19329886 - 19329842
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  19329886 tcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38267084 - 38267040
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||    
T  38267084 tcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 46033859 - 46033903
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||    
T  46033859 aaagggtgtattgccacctaagaatatctatgtatcataactcta 46033903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 10343626 - 10343664
Alignment:
Q  8 gtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  10343626 gtgtatttccacctaagggtgtctatgtatcattactct 10343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22343405 - 22343359
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  22343405 tcaaggggtgtattgccacctaagggtgtttatgtatcataactcta 22343359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41915785 - 41915739
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  41915785 tcaaggggtgtattgccacctaagggtgtttatgtatcataactcta 41915739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 3784031 - 3783998
Alignment:
Q  9 tgtattgccacctaagagtgtctatgtatcatta 42  Q
    |||||||||||||||| |||||||||||||||||    
T  3784031 tgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19436243 - 19436288
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  19436243 tcaaaaggtgtattgtcacctaaggatgtctatgtatcattactct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 32951551 - 32951592
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattact 44  Q
    ||||| ||||||| || |||||||||||||||||||||||||    
T  32951551 aaaggatgtattgtcatctaagagtgtctatgtatcattact 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38044241 - 38044196
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  38044241 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 38044196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21234445 - 21234401
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||| ||||||||  |||||||||||||| ||||    
T  21234445 tcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32564482 - 32564526
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||| |||||||||||||||||||| ||| |||||||||| ||||    
T  32564482 tcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5574544 - 5574590
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5574544 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 5574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7465791 - 7465840
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaat 50  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  7465791 tcaaagggtgtattgccatctaagggtgtctatgtatcattactctaaat 7465840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9058524 - 9058479
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  9058524 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30915507 - 30915462
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  30915507 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33436156 - 33436201
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  33436156 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28863499 - 28863453
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  28863499 tcaaagggtgtattgccacctaagggtgtctatgtatcattattcta 28863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19930876 - 19930917
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcatta 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  19930876 tcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17473064 - 17473020
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  17473064 tcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27864748 - 27864704
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  27864748 tcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40701522 - 40701478
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  40701522 tcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 28381717 - 28381755
Alignment:
Q  7 ggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  28381717 ggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32505704 - 32505750
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  32505704 tcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcta 32505750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10249438 - 10249483
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||    
T  10249438 tcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 10249483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20700859 - 20700814
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  20700859 tcaaagggtgtattgccacataaggatgtctatgtatcattactct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38882870 - 38882914
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  38882870 tcaaagggt-tattgccacctaagggtgtctatgtatcattactct 38882914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4060729 - 4060685
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  4060729 tcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13438387 - 13438343
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||||    
T  13438387 tcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40613958 - 40614002
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||    
T  40613958 tcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 38273200 - 38273243
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  38273200 aaagggtgtattgccatctaagaatgtctatgtatcataactct 38273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33436255 - 33436209
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||||    
T  33436255 tcaaaaggtgtattgccatctaaggatgtctatgtatcattactcta 33436209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2533168 - 2533120
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    ||||||| ||||||||||| ||||  |||||||||||||| ||||||||    
T  2533168 tcaaaggatgtattgccacttaaggatgtctatgtatcataactctaaa 2533120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 26891565 - 26891605
Alignment:
Q  6 gggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||| ||| ||||||||||| |||||    
T  26891565 gggtgtattgccacctaagggtggctatgtatcataactct 26891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41575181 - 41575133
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    |||||||||||||| ||| |||||  |||||||||||||||||| ||||    
T  41575181 tcaaagggtgtattaccatctaaggatgtctatgtatcattactttaaa 41575133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15197377 - 15197333
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15197377 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5957874 - 5957831
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattact 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  5957874 tcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 504177 - 504221
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  504177 tcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1179996 - 1180040
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  1179996 tcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12831091 - 12831047
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  12831091 tcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34012352 - 34012396
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  34012352 tcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40423999 - 40424043
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  40423999 tcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 4854921 - 4854964
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  4854921 aaagggtgtattgccacctaaggatgtctatgtatcattactct 4854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 9122234 - 9122191
Alignment:
Q  6 gggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcattactttaaa 9122191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37038523 - 37038477
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  37038523 tcaaagggtgtattgccacctaaagatgtctatgtatcattactcta 37038477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14547966 - 14547921
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||    
T  14547966 tcaaatggtgtattgccacctaagggtgtctatgtatctttactct 14547921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15048237 - 15048281
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||    
T  15048237 tcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20074990 - 20075034
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||| |||||||||||||||||  |||||||||||||||||||    
T  20074990 tcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23122653 - 23122697
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||    
T  23122653 tcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30479530 - 30479574
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||    
T  30479530 tcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 44507145 - 44507189
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||    
T  44507145 aaagagtgtattaccacctaagggtgtctatgtatcattactcta 44507189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16383421 - 16383376
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  16383421 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 16383376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34307260 - 34307215
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  34307260 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 34307215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14831858 - 14831814
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14831858 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2740318 - 2740270
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2740318 tcaaagggtgtattgccacctaaggatgtctatgtatcattactctaaa 2740270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36875659 - 36875702
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattact 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  36875659 tcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 40145449 - 40145407
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  40145449 aaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18520940 - 18520981
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcatta 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  18520940 tcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36732998 - 36733043
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  36732998 tcaaagggtgtattgctacctaagggtgtctatgtatcattactct 36733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33149694 - 33149738
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  33149694 tcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35785243 - 35785199
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  35785243 tcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28177819 - 28177775
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||    
T  28177819 tcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42414358 - 42414402
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||   ||||||||||||||||||||    
T  42414358 tcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 26720558 - 26720516
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||  |||||||||||||| ||||    
T  26720558 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 26990307 - 26990265
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||  |||||||||||||| ||||    
T  26990307 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3921321 - 3921366
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  3921321 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 3921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 13811688 - 13811651
Alignment:
Q  9 tgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  13811688 tgtattgccacctaagggtgtctatgtatctttactct 13811651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 33825387 - 33825424
Alignment:
Q  8 gtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  33825387 gtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 41470474 - 41470519
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactctaa 48  Q
    ||||| |||||||||||||||  |||||||||||| ||||||||||    
T  41470474 aaaggatgtattgccacctaaaggtgtctatgtattattactctaa 41470519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6679742 - 6679694
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    ||||| |||||||||||||||||   |||||||||||||| ||||||||    
T  6679742 tcaaaaggtgtattgccacctaaagatgtctatgtatcataactctaaa 6679694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 35943956 - 35943992
Alignment:
Q  9 tgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  35943956 tgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11095409 - 11095454
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  11095409 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 11095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49607458 - 49607413
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  49607458 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 49607413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53982055 - 53982011
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  53982055 tcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54868951 - 54868996
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  54868951 tcaaaaggtgtattgccacctaagggtgtctatgtatcattactct 54868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33644244 - 33644200
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  33644244 tcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52629344 - 52629305
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  52629344 tcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27714947 - 27714992
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||    
T  27714947 tcaaagggtgtattaccacctaaaggtgtctatgtatcattactct 27714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33118907 - 33118952
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  33118907 tcaaagggtgtattgtcacctaagggtgtctatgtatcataactct 33118952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36707480 - 36707525
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||    
T  36707480 tcaaagggtgtattgtcacctaagggtatctatgtatcattactct 36707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8076437 - 8076393
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||    
T  8076437 tcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14623895 - 14623939
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||| |||||||||||||||||||  |||||||||||||||||||    
T  14623895 tcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 17470443 - 17470403
Alignment:
Q  7 ggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  17470443 ggtgtattgccacctaaaggtgtctatgtatcattactcta 17470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24700010 - 24700058
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaa 49  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||||||    
T  24700010 tcaaaaggtgtattgccaactaaggatgtctatgtatcattactctaaa 24700058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48587147 - 48587187
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcatt 41  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  48587147 tcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31456733 - 31456690
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattact 44  Q
    ||||||||||||||||| |||| | |||||||||||||||||||    
T  31456733 tcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8956806 - 8956760
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  8956806 tcaaaggatgtattgccacataaggatgtctatgtatcattactcta 8956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 26141590 - 26141632
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||||  |||||||||||||| ||||    
T  26141590 aaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35536670 - 35536624
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||| ||||||||||||| ||||  |||||||||||||||||||||    
T  35536670 tcaaatggtgtattgccacataaggatgtctatgtatcattactcta 35536624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 45058611 - 45058652
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  45058611 aagggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 26754736 - 26754700
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcat 40  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  26754736 aagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30801789 - 30801829
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcatt 41  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  30801789 tcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2581959 - 2581914
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  2581959 tcaaagggtgtattgccacctaagggtgtctatgtatcattactct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9474932 - 9474976
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  9474932 tcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51898739 - 51898788
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaaat 50  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  51898739 tcaaagggtgtattgccacctaaagatgtctatgtatcattactctaaat 51898788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3000363 - 3000319
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  3000363 tcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47452376 - 47452420
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  47452376 tcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48716338 - 48716382
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  48716338 tcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 38632383 - 38632422
Alignment:
Q  7 ggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38632383 ggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 50630501 - 50630455
Alignment:
Q  2 caaagggtgtattgccacctaagagtgtctatgtatcattactctaa 48  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||    
T  50630501 caaaggatgtattgccacctaagggtatctatgtatcattactctaa 50630455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38595198 - 38595153
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||    
T  38595198 tcaaagggtgtattgccacctaaaggtgtttatgtatcattactct 38595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27564791 - 27564835
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||    
T  27564791 tcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 32813289 - 32813246
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||||  |||||||||||||| |||||    
T  32813289 aaagggtgtattgccacctaaggatgtctatgtatcataactct 32813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41758849 - 41758803
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||||    
T  41758849 tcaaagggtgtattgccatttaatggtgtctatgtatcattactcta 41758803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8346444 - 8346489
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| |||||||||||||||||  ||| |||||||||||||||||    
T  8346444 tcaaatggtgtattgccacctaaaggtgactatgtatcattactct 8346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23597147 - 23597192
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||| ||||||||||||||||   ||||||||||||||||||||    
T  23597147 tcaaagagtgtattgccacctaatgatgtctatgtatcattactct 23597192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 34340100 - 34340133
Alignment:
Q  7 ggtgtattgccacctaagagtgtctatgtatcat 40  Q
    |||||||| |||||||||||||||||||||||||    
T  34340100 ggtgtattaccacctaagagtgtctatgtatcat 34340133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43176 - 43132
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||||| ||||||| | ||||||| |||||||||||||||||||    
T  43176 tcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11152437 - 11152476
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcattact 44  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  11152437 aagggtgtattgccacctaag-gtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37649242 - 37649198
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||| ||||||||||||||||   |||||||||||||||||||    
T  37649242 tcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50591056 - 50591100
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||    
T  50591056 tcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6034088 - 6034044
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  6034088 tcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11511518 - 11511562
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  11511518 tcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29234301 - 29234348
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactctaa 48  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  29234301 tcaaagggtgtattgccatctaagggtgtctatgtatcattactctaa 29234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 480503 - 480548
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  480503 tcaaagggtgtattgtcacctaagggtgtctatgtatcattactct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29239930 - 29239885
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||    
T  29239930 tcaaatggtgtattgccacctaagggtgtctatgtatcattactct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48183105 - 48183150
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  48183105 tcaaagggtgtattgccacgtaagggtgtctatgtatcattactct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50052484 - 50052529
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  50052484 tcaaagggtgtattgccacctaaggatgtctatgtatcattactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41236391 - 41236347
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  41236391 tcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 42044426 - 42044468
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  42044426 aaggatgtattgccacctaagggtgtctatgtatcattactct 42044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 44536804 - 44536850
Alignment:
Q  4 aagggtgtattgccacctaagagtgtctatgtatcattactctaaat 50  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||    
T  44536804 aagggtgtattgccacctaaaagtgtttatgtatcataactctaaat 44536850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32767002 - 32766957
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||    
T  32767002 tcaaggggtgtattgccacctaagagtgtttatgtatcataactct 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3481698 - 3481654
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  3481698 tcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50526227 - 50526271
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||   |||||||||||||||||||    
T  50526227 tcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54473589 - 54473633
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  54473589 tcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50813948 - 50813994
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||||||    
T  50813948 tcaaggggtgtattaccacctaagagtgtttatgtatcataactcta 50813994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19670772 - 19670817
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  19670772 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 19670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24995163 - 24995208
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||||    
T  24995163 tcaaagggtgtattgccatctaagggtgtccatatatcattactct 24995208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 55475235 - 55475190
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||    
T  55475235 tcaaagggtgtattgccacctaaggatgtttatgtatcataactct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40574823 - 40574779
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||| |||||||||  |||||||||||||| ||||    
T  40574823 tcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22880714 - 22880755
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcatta 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  22880714 tcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32869722 - 32869678
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  32869722 tcaaagggtgtattgccacctaagggtgtctatgtatctttactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 6209528 - 6209566
Alignment:
Q  8 gtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6209528 gtgtattgccacctaagggtgtctatgtatcattactct 6209566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11427662 - 11427614
Alignment:
Q  1 tcaaagggtgtattgccacctaagag--tgtctatgtatcattactcta 47  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  11427662 tcaaaggatgtattgccacctaagagggtgtctatgtatcattactcta 11427614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31110815 - 31110860
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||    
T  31110815 tcaaagggtgtattgccacctaaggatgtctatgtatcataactct 31110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 17598590 - 17598554
Alignment:
Q  9 tgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17598590 tgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31109456 - 31109500
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  31109456 tcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15990098 - 15990143
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  15990098 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 15990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30341416 - 30341461
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    |||| ||||||||||||||||||| |||| |||||||||| |||||    
T  30341416 tcaaggggtgtattgccacctaagggtgtttatgtatcataactct 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15508080 - 15508124
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||||    
T  15508080 tcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 22422084 - 22422120
Alignment:
Q  11 tattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||||||||||  |||||||||||||||||||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactcta 22422120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31953086 - 31953130
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||| |||||||||||||||||||  ||||||| |||||||||||    
T  31953086 tcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 31976290 - 31976246
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactcta 47  Q
    ||||||| ||||||||||||||  |||||||||||||| ||||||    
T  31976290 aaagggtatattgccacctaaggatgtctatgtatcataactcta 31976246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  3 aaagggtgtattgccacctaagagtgtctatgtatcattactc 45  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10165 - 10210
Alignment:
Q  1 tcaaagggtgtattgccacctaagagtgtctatgtatcattactct 46  Q
    ||||||| |||||||||||||||  ||||||||||||||| |||||    
T  10165 tcaaaggatgtattgccacctaaaggtgtctatgtatcataactct 10210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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