View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20986_low_2 (Length: 375)

Name: NF20986_low_2
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20986_low_2
NF20986_low_2
[»] chr4 (2 HSPs)
chr4 (78-357)||(55907344-55907623)
chr4 (1-53)||(55907258-55907310)
[»] chr2 (4 HSPs)
chr2 (78-357)||(1036086-1036365)
chr2 (220-357)||(1036422-1036559)
chr2 (1-53)||(1036000-1036052)
chr2 (164-215)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (165-233)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (163-216)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (168-233)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (187-227)||(10168825-10168865)
chr7 (187-227)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 78 - 357
Target Start/End: Original strand, 55907344 - 55907623
Alignment:
Q  78 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  178 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  278 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaatacctttt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaatacctttt 55907623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55907258 - 55907310
Alignment:
Q  1 agaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 53  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907258 agaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 78 - 357
Target Start/End: Original strand, 1036086 - 1036365
Alignment:
Q  78 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  178 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  278 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaatacctttt 357  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaatacctttt 1036365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 1036422 - 1036559
Alignment:
Q  220 cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctaca 319  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctaca 1036521  T
Q  320 acggtgacctcaacgcacttctctgccaaatacctttt 357  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  1036522 acggtgacctcaacgcgcttctctaccaaatacctttt 1036559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1036000 - 1036052
Alignment:
Q  1 agaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 53  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036000 agaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  164 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 215  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  165 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 233  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  163 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 216  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  168 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 233  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  187 gtctccaaacagtttctctcagtcaccaacactcttcgatt 227  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  187 gtctccaaacagtttctctcagtcaccaacactcttcgatt 227  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University