View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20986_low_3 (Length: 352)
Name: NF20986_low_3
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20986_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 1429497 - 1429175
Alignment:
| Q |
19 |
cttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattctcttgtacattcactct |
118 |
Q |
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| T |
1429497 |
cttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatataaatttcactttatgattctcttgtacattcactct |
1429398 |
T |
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| Q |
119 |
ctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatacttttgtgtaaaattgaaatcacacnnnnnnnnnnnaaagaa |
218 |
Q |
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| T |
1429397 |
ctc--gtgtttggattcaaaaagaaaatttaaaaactgaagagagaagaatttagatatttttgtgtaaaattgaaatcacac-attttttttaaaagaa |
1429301 |
T |
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| Q |
219 |
aaaatcatacacttgttattctaagttcatctttattccatttatatgagctccatttaacatacaaatacaatgatcactactttgttcccttttacgg |
318 |
Q |
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| T |
1429300 |
aaaatcatacacttgttattctgagttcatctttattccatttagatgagctccatttaacatataaatacaatgatcactactttgtt-ccttttacgg |
1429202 |
T |
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| Q |
319 |
tgcaccaataataaattccctttgctt |
345 |
Q |
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| T |
1429201 |
tgcaccaatattaagttccctttgctt |
1429175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 1453862 - 1453773
Alignment:
| Q |
19 |
cttagtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattctcttgta |
108 |
Q |
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| T |
1453862 |
cttagtaatataacatcaaattcaaatatttatatatttaagctattaattgttggattaagagaaatcccactttatgattctcttgta |
1453773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 1460503 - 1460423
Alignment:
| Q |
22 |
agtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattct |
102 |
Q |
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| T |
1460503 |
agtaatttaccatcaaattcaaatatttatatatttaagctattaattgttggattaagagaaatcttactttatgattct |
1460423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 1556420 - 1556500
Alignment:
| Q |
22 |
agtagtttaccatcaaattcaaatatttgtatatttagcctactaattgttggattaatagaaatttcgctttatgattct |
102 |
Q |
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| T |
1556420 |
agtaatttaccatcaaattcaaatatttatatatttaagctattaattgttggattaagagaaatcttactttatgattct |
1556500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 1567893 - 1568015
Alignment:
| Q |
65 |
taattgttggattaatagaaatttcgctttatgattctcttgtacattcactctctcttgtgtttggattcaaaaagaaaatttaaaaactgaagagaga |
164 |
Q |
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| T |
1567893 |
taattgttggattaagagaaatcccactttatgattctcttgaa---------tctcttttgtttggattgaaaaaaaaaattgaaaaatgtaggagaga |
1567983 |
T |
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| Q |
165 |
agaatttagatacttttgtgtaaaattgaaat |
196 |
Q |
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| T |
1567984 |
agaatttagagacttttgtgtaaaatggaaat |
1568015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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