View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20986_low_5 (Length: 316)
Name: NF20986_low_5
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20986_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 26003178 - 26003472
Alignment:
| Q |
1 |
gactttttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagtt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26003178 |
gacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagtt |
26003277 |
T |
|
| Q |
101 |
caactatagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26003278 |
caactatagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttatt |
26003377 |
T |
|
| Q |
201 |
gtgcagggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26003378 |
gtgcagggagcaatagacaaggatccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatg |
26003472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 26017924 - 26018208
Alignment:
| Q |
1 |
gactttttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgttaattataaattctttcaagaaatcacagt- |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||| || ||| || |||| | |
|
|
| T |
26017924 |
gactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttcttt----------tcatgagatcaatttg |
26018013 |
T |
|
| Q |
100 |
-tcaactatagtttagtcttaacttagtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatcctta |
198 |
Q |
| |
|
||||||||||| | | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |
|
|
| T |
26018014 |
ctcaactatagt--actattaaacgagtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagctgtagatcttgctggtccttt |
26018111 |
T |
|
| Q |
199 |
ttgtgcagggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatg |
295 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26018112 |
atgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatg |
26018208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30374430 - 30374471
Alignment:
| Q |
1 |
gactttttaatcttagcttcagatggattatgggaaaaggta |
42 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
30374430 |
gacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University