View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20986_low_9 (Length: 226)
Name: NF20986_low_9
Description: NF20986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20986_low_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 4901334 - 4901121
Alignment:
| Q |
13 |
aatatccttagcaagtttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggaagtgccttttct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4901334 |
aatatccttagcaagtttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggtagtaccttttct |
4901235 |
T |
|
| Q |
113 |
tccaagtagttatttagctcagactttgattgtatatcactagtatcattgacaaacgagtcataaccgctaagataattgctaccaggaacatcatcaa |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4901234 |
tccaagtagttatctagctcagactttgattgtatatcactggtatcattgacaaacgagtcataaccactaagataattgctaccaggaacatcatcaa |
4901135 |
T |
|
| Q |
213 |
tatttgaatcattg |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4901134 |
tatttgaatcattg |
4901121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 20674289 - 20674079
Alignment:
| Q |
14 |
atatccttagcaagtttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggaagtgccttttctt |
113 |
Q |
| |
|
||||| ||||| | ||||||| ||||||||||||| || |||||||||||||||||||| || |||||||||| |||||| ||||| | | | || || | |
|
|
| T |
20674289 |
atatctttagcgattttttgctatgtgggatacttgatcccatttgttttccaccatccaagtatatcaaatgtagcactcctaggcaatactttctcct |
20674190 |
T |
|
| Q |
114 |
ccaagtagttatttagctcagactttgattgtatatcactagtatcattgacaaacgagtcataaccgctaagataattgctaccaggaacatcatcaat |
213 |
Q |
| |
|
|||||||| ||| || |||| ||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||| |||||||| ||| | |
|
|
| T |
20674189 |
ccaagtagatatctaactcaaacttt-attgtatatcactagtatcattgacaaatgagtcataaccacttagataattgttactaggaacattatctaa |
20674091 |
T |
|
| Q |
214 |
atttgaatcatt |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20674090 |
atttgaatcatt |
20674079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 7580772 - 7580985
Alignment:
| Q |
13 |
aatatccttagcaagtttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggaagtgccttttct |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
7580772 |
aatatccttagcaattttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggtagtaccttttct |
7580871 |
T |
|
| Q |
113 |
tccaagtagttatttagctcagactttgattgtatatcactagtatcattgacaaacgagtcataaccgctaagataattgctaccaggaacatcatcaa |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7580872 |
tccaagtagttatctagctcagactttgattgtatatcactggtatcattgacaaacgagtcataaccactaagataattgctaccaggaacatcatcaa |
7580971 |
T |
|
| Q |
213 |
tatttgaatcattg |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7580972 |
tatttgaatcattg |
7580985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 30425529 - 30425741
Alignment:
| Q |
13 |
aatatccttagcaagtttttgcaatgtgggatacttaattccatttgttttccaccatcctaggatatcaaatgcagcacttctaggaagtgccttttct |
112 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||| || ||||||||||||||||||| || |||||||||| |||||| ||||| | | | || || |
|
|
| T |
30425529 |
aatatctttagcgattttttgcaatgtgggatacttgatcccatttgttttccaccatcaaagtatatcaaatgtagcactcctaggcaatactttctcc |
30425628 |
T |
|
| Q |
113 |
tccaagtagttatttagctcagactttgattgtatatcactagtatcattgacaaacgagtcataaccgctaagataattgctaccaggaacatcatcaa |
212 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| || |||||||| ||| | |
|
|
| T |
30425629 |
tccaagtagatatctaactcagactttgattgtatatcactagtatcattgacaaatgagtcataaccacttagataattgtaactaggaacattatcta |
30425728 |
T |
|
| Q |
213 |
tatttgaatcatt |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30425729 |
gatttgaatcatt |
30425741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University