View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_high_2 (Length: 491)
Name: NF20987_high_2
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 3194267 - 3193852
Alignment:
| Q |
18 |
aacaagaacggtgttccataaaatatnnnnnnncaatatagctactagagtcggattgttcatgcaactaactattttaatgtagttgatatatgtccat |
117 |
Q |
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| T |
3194267 |
aacaagaacggtgttccataaaatataaaaaaacaatatagctactagagtcggattgttcatgcaactaactattttaatgtagttgatatatgtccat |
3194168 |
T |
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| Q |
118 |
ccatgtttctaaggatgttgaaatttgggatatctcgttgagtgttttctctaaaacaatgaataattgtggaccaagaaaggaagattgtattataagg |
217 |
Q |
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| T |
3194167 |
ccatgtttctaaggatgttgaaatttgggatatctcgttgagtgttttctctaaaacaatgaataattgtggaccaagaaaggaagattgtattataagg |
3194068 |
T |
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| Q |
218 |
aatctctttttgttcgatataagtcattttcgtgcattttattctctttaatttactccatgctcgattgttagttaaattacttattaaataattaggt |
317 |
Q |
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| T |
3194067 |
aatctctttttgttcgatataagtccttttcgtgcattttattctctttaatttactcaatgctcgattgttagttaaattacttattaaataattaggt |
3193968 |
T |
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| Q |
318 |
agatattggatagactaagattattcgtaaatatatttagttaagatttaatggtaagttttatggaattaatttgtatatagtaaagtttctttacaca |
417 |
Q |
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| T |
3193967 |
agatattggatagactaagattattcgtaaatatatttagttaagattcaatggtaagttttatggaattaatttgtatatagtaaagtttctttacaca |
3193868 |
T |
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| Q |
418 |
tcttgtcaaaagaaaa |
433 |
Q |
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| T |
3193867 |
tcttgtcaaaaaaaaa |
3193852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 474
Target Start/End: Complemental strand, 3193835 - 3193806
Alignment:
| Q |
445 |
catgtatacaaccatttctatatactccat |
474 |
Q |
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| T |
3193835 |
catgtatacaaccatttctatatactccat |
3193806 |
T |
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