View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20987_high_3 (Length: 348)

Name: NF20987_high_3
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20987_high_3
NF20987_high_3
[»] chr1 (3 HSPs)
chr1 (10-147)||(10640759-10640896)
chr1 (144-330)||(10641051-10641234)
chr1 (233-308)||(10641759-10641834)
[»] chr2 (1 HSPs)
chr2 (233-288)||(8255462-8255517)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 10640759 - 10640896
Alignment:
Q  10 aagaatataactcgggtttctcgtatcttttagagaaaaattattgcctaaagtagtcttaaatttgtgttgaaagacgacggtatacctcctacgatat 109  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10640759 aagaaaataacttgggtttctcgtatcttctagagaaaaattattggctaaagtagtcttaaatttgtgtcgaaagacgacggtatacctcctaggatat 10640858  T
Q  110 tgtgtcatttaagaatgcattgtttacgaagaactatt 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10640859 tgtgtcatttaagaatgcattgtttacgaagaactatt 10640896  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 10641051 - 10641234
Alignment:
Q  144 tattgaaatgagaatgagaagggtgaagacttctca---aatgtagtttgtatagtcatttaagtcaattcgtcagtttattttannnnnnncaatttgg 240  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||       |||||||||||||||||||||       ||||||||    
T  10641051 tattgaaatgagaatgagaagggtgaagacttctcatcaaatgtagtttgtatagtc-------tcaattcgtcagtttattttatttttttcaatttgg 10641143  T
Q  241 tgttggttttgaatttatatttaataaattgttcttgaattcaataagac-ttttttctctcattatctccattaagtcaatggatggttt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  10641144 tgttggttttgaatttatatttaataaattgttcttgaattcaataagactttttttctcttattatcttcattaagtcaatggattgttt 10641234  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 10641759 - 10641834
Alignment:
Q  233 caatttggtgttggttttgaatttatatttaataaattgttcttgaattcaataagactttt-ttctctcattatct 308  Q
    ||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||  ||||  |||||||||||||    
T  10641759 caatttggtgttggttttgaa-ttatttttagtcaattgttcttgaattcaataaggtttttaatctctcattatct 10641834  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 8255462 - 8255517
Alignment:
Q  233 caatttggtgttggttttgaatttatatttaataaattgttcttgaattcaataag 288  Q
    ||||||| |||||||||| ||||||| || |||| |||||||| ||||||||||||    
T  8255462 caatttgatgttggttttaaatttattttgaatatattgttctcgaattcaataag 8255517  T

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