View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20987_high_6 (Length: 266)

Name: NF20987_high_6
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20987_high_6
NF20987_high_6
[»] chr1 (3 HSPs)
chr1 (19-258)||(49547080-49547319)
chr1 (191-235)||(32123584-32123628)
chr1 (206-247)||(34141638-34141679)
[»] chr3 (4 HSPs)
chr3 (192-235)||(21777206-21777249)
chr3 (191-229)||(42668172-42668210)
chr3 (195-240)||(35586173-35586218)
chr3 (191-242)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (192-242)||(1175862-1175912)
chr5 (192-242)||(12150688-12150738)
chr5 (189-258)||(13839473-13839540)
chr5 (195-241)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (196-247)||(32874844-32874894)
chr8 (192-235)||(39418173-39418216)
[»] chr7 (2 HSPs)
chr7 (191-234)||(13858445-13858488)
chr7 (193-242)||(7181389-7181438)
[»] chr4 (2 HSPs)
chr4 (193-247)||(56439290-56439344)
chr4 (191-242)||(34713068-34713117)
[»] chr2 (2 HSPs)
chr2 (193-247)||(5193176-5193229)
chr2 (197-247)||(38216438-38216488)
[»] chr6 (1 HSPs)
chr6 (195-247)||(6695406-6695458)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 49547319 - 49547080
Alignment:
Q  19 gttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaa 118  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547319 gttcatgcattatatctacttcgggaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaa 49547220  T
Q  119 ctaagactctgagagtttcgaggggaggaagagtaggggggaaattggagaaatcttgcacannnnnnnnatagtgtttttgtagataatgataaatgaa 218  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||    
T  49547219 ctaagactctgagagtttcgaggggagggagagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatgaa 49547120  T
Q  219 tgtttatcattaatatacttttaaattttggaagtattat 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49547119 tgtttatcattaatatacttttaaattttggaagtattat 49547080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 32123628 - 32123584
Alignment:
Q  191 agtgtttttgtagataatgataaatgaatgtttatcattaatata 235  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  32123628 agtgtttttgtaaagaatgataaatgaatgtttatcattaatata 32123584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 34141679 - 34141638
Alignment:
Q  206 aatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  34141679 aatgataaattaatgtttatgattaatatatttttaaatttt 34141638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 21777206 - 21777249
Alignment:
Q  192 gtgtttttgtagataatgataaatgaatgtttatcattaatata 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  21777206 gtgtttttgtagagaatgataaatgaatgtttatcattaatata 21777249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 42668210 - 42668172
Alignment:
Q  191 agtgtttttgtagataatgataaatgaatgtttatcatt 229  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgtttatcatt 42668172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 35586173 - 35586218
Alignment:
Q  195 tttttgtagataatgataaatgaatgtttatcattaatatactttt 240  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  35586173 tttttgtagagaatgataaatgaaagtttatcattaatatattttt 35586218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 42157733 - 42157784
Alignment:
Q  191 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 242  Q
    |||| ||||| ||| |||||||||||||||||||||||| ||||| ||||||    
T  42157733 agtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaa 42157784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 1175862 - 1175912
Alignment:
Q  192 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 242  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  1175862 gtgtttttgtagagaatgataaatgaatgtttatgattaatatatttttaa 1175912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 12150738 - 12150688
Alignment:
Q  192 gtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 242  Q
    ||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  12150738 gtgtttttgtagataatgataaatgaatacttatgattaatatatttttaa 12150688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 13839473 - 13839540
Alignment:
Q  189 atagtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaattttggaagtattat 258  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||  |||||| |||||  ||||||||    
T  13839473 atagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattat 13839540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 33740020 - 33740066
Alignment:
Q  195 tttttgtagataatgataaatgaatgtttatcattaatatactttta 241  Q
    ||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  33740020 tttttttagataatgataaatcaatgtttataattaatataatttta 33740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 32874894 - 32874844
Alignment:
Q  196 ttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  32874894 ttttgtagataatgaaaaatgaatgtttatgattaatata-ttttaaatttt 32874844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 39418216 - 39418173
Alignment:
Q  192 gtgtttttgtagataatgataaatgaatgtttatcattaatata 235  Q
    ||||||||||||  |||||||||||||||||||| |||||||||    
T  39418216 gtgtttttgtagggaatgataaatgaatgtttatgattaatata 39418173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 13858488 - 13858445
Alignment:
Q  191 agtgtttttgtagataatgataaatgaatgtttatcattaatat 234  Q
    |||||||||||||||||||||||||||||| |||| ||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatat 13858445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 7181389 - 7181438
Alignment:
Q  193 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 242  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||| ||||||    
T  7181389 tgtttttgtagagaatgataaaagaatgcttatgattaatatatttttaa 7181438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 56439290 - 56439344
Alignment:
Q  193 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||| |||||| ||||    
T  56439290 tgttattgtagagaatgatagatgaatgttaatcattaatatatttttaattttt 56439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 34713117 - 34713068
Alignment:
Q  191 agtgtttttgtagataatgataaatgaatgtttatcattaatatacttttaa 242  Q
    ||||||||||||||   |||||||||||||||||| ||||||||| ||||||    
T  34713117 agtgtttttgtagag--tgataaatgaatgtttatgattaatatatttttaa 34713068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 5193229 - 5193176
Alignment:
Q  193 tgtttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    |||||||||| | ||| |||||||||||||||| ||||||||| |||||||||||    
T  5193229 tgtttttgtacagaataataaatgaatgtttatgattaatata-ttttaaatttt 5193176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 38216438 - 38216488
Alignment:
Q  197 tttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    |||||||| ||||||| |||||||||||| ||||||||| |||||| ||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaattttt 38216488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 6695458 - 6695406
Alignment:
Q  195 tttttgtagataatgataaatgaatgtttatcattaatatacttttaaatttt 247  Q
    ||||| |||| ||||||||||||||| |||| ||||||||| |||| ||||||    
T  6695458 tttttttagagaatgataaatgaatgcttataattaatataatttttaatttt 6695406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University