View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_1 (Length: 499)
Name: NF20987_low_1
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 310 - 468
Target Start/End: Complemental strand, 49713092 - 49712934
Alignment:
| Q |
310 |
ctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttccttt |
409 |
Q |
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| T |
49713092 |
ctgcaattctttgacaccaagcttgcatttttatcatcgccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttccttt |
49712993 |
T |
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| Q |
410 |
gcagttctctgggtagctttgttgagtcgcatccgaagaacagtctcacatcagtttgg |
468 |
Q |
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| T |
49712992 |
gcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttgg |
49712934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 310 - 468
Target Start/End: Complemental strand, 49655570 - 49655412
Alignment:
| Q |
310 |
ctgcaattctttgacaccaagcttgcatttttatcatctgcatacaatgccacaaccgaactcgtttcattttctgcagagcaaccaattgtgttccttt |
409 |
Q |
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| T |
49655570 |
ctgcaattctttgacaccaggcttgcatttttatcatcatcatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgttccttt |
49655471 |
T |
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| Q |
410 |
gcagttctctgggtagctttgttgagtcgcatccgaagaacagtctcacatcagtttgg |
468 |
Q |
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| T |
49655470 |
gcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttgg |
49655412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 49655785 - 49655659
Alignment:
| Q |
178 |
agagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcacagccacaccttcctccggt |
277 |
Q |
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| T |
49655785 |
agagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccacaccttcctccagt |
49655686 |
T |
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| Q |
278 |
gctgttacacgcattgcaatcactagc |
304 |
Q |
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| T |
49655685 |
gctgttacactcattgcaatcactagc |
49655659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 49713307 - 49713181
Alignment:
| Q |
178 |
agagagagaaacctggaggacattttgcagcatgaactaaatcagtacagtaacacttgaaagtgtatgcaactttatcacagccacaccttcctccggt |
277 |
Q |
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| T |
49713307 |
agagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagt |
49713208 |
T |
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| Q |
278 |
gctgttacacgcattgcaatcactagc |
304 |
Q |
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| T |
49713207 |
gctgttacactcattgcaatcactagc |
49713181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 28448784 - 28448730
Alignment:
| Q |
389 |
agcaaccaattgtgttcctttgcagttctctgggtagctttgttgagtcgcatcc |
443 |
Q |
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| T |
28448784 |
agcaaccgattgtgttcctttgcagcactctgagtagctttgttgagtcgcatcc |
28448730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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