View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20987_low_10 (Length: 238)

Name: NF20987_low_10
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20987_low_10
NF20987_low_10
[»] chr8 (15 HSPs)
chr8 (1-85)||(31871253-31871337)
chr8 (165-227)||(16388802-16388864)
chr8 (165-227)||(36928566-36928628)
chr8 (167-226)||(31608790-31608849)
chr8 (165-227)||(35756672-35756734)
chr8 (165-224)||(39071766-39071825)
chr8 (165-227)||(13186150-13186212)
chr8 (160-217)||(28339245-28339302)
chr8 (165-224)||(4405939-4405998)
chr8 (166-217)||(20385659-20385710)
chr8 (160-218)||(9499883-9499940)
chr8 (165-227)||(36186343-36186405)
chr8 (165-227)||(40318240-40318302)
chr8 (166-227)||(8747540-8747601)
chr8 (166-202)||(35449879-35449915)
[»] chr2 (19 HSPs)
chr2 (161-227)||(6848010-6848076)
chr2 (165-227)||(10712813-10712875)
chr2 (165-227)||(36382251-36382313)
chr2 (165-230)||(15848178-15848243)
chr2 (165-227)||(2318248-2318310)
chr2 (165-227)||(37895623-37895685)
chr2 (160-230)||(6846869-6846939)
chr2 (165-227)||(39423605-39423667)
chr2 (165-227)||(44714037-44714099)
chr2 (165-230)||(25892484-25892549)
chr2 (160-227)||(3653356-3653423)
chr2 (165-227)||(36479808-36479870)
chr2 (165-227)||(36755183-36755245)
chr2 (160-221)||(11689626-11689687)
chr2 (166-217)||(21370488-21370539)
chr2 (166-217)||(44044205-44044256)
chr2 (159-221)||(10840560-10840622)
chr2 (161-202)||(11349506-11349547)
chr2 (160-221)||(11721372-11721433)
[»] chr7 (21 HSPs)
chr7 (165-227)||(28469284-28469346)
chr7 (161-227)||(17203655-17203721)
chr7 (165-227)||(32053419-32053481)
chr7 (165-227)||(40379859-40379921)
chr7 (165-227)||(42731509-42731571)
chr7 (165-227)||(10935884-10935946)
chr7 (165-227)||(27396871-27396933)
chr7 (160-217)||(30128633-30128690)
chr7 (165-226)||(45010688-45010749)
chr7 (165-230)||(48789076-48789141)
chr7 (165-217)||(5457193-5457245)
chr7 (161-221)||(38643636-38643696)
chr7 (160-227)||(12229348-12229415)
chr7 (165-227)||(2640454-2640516)
chr7 (165-227)||(3914228-3914290)
chr7 (165-227)||(23181270-23181332)
chr7 (160-221)||(11397463-11397524)
chr7 (166-227)||(17885719-17885780)
chr7 (160-217)||(18670149-18670206)
chr7 (166-227)||(22871399-22871460)
chr7 (159-211)||(5455911-5455963)
[»] chr3 (18 HSPs)
chr3 (165-227)||(40758234-40758296)
chr3 (160-227)||(39399368-39399435)
chr3 (166-227)||(9367832-9367893)
chr3 (164-227)||(33689655-33689718)
chr3 (131-227)||(54317907-54318005)
chr3 (165-227)||(23458255-23458317)
chr3 (165-227)||(26463874-26463936)
chr3 (165-221)||(33156276-33156332)
chr3 (165-212)||(55052539-55052586)
chr3 (165-227)||(9294234-9294296)
chr3 (160-225)||(41988047-41988112)
chr3 (160-216)||(44654790-44654846)
chr3 (165-216)||(51994173-51994224)
chr3 (159-221)||(30380930-30380992)
chr3 (161-215)||(32717065-32717119)
chr3 (165-227)||(43384373-43384435)
chr3 (160-217)||(20704515-20704572)
chr3 (165-230)||(53756834-53756899)
[»] chr6 (16 HSPs)
chr6 (164-227)||(33647052-33647115)
chr6 (165-227)||(30725849-30725911)
chr6 (165-230)||(12080726-12080791)
chr6 (165-227)||(21627989-21628051)
chr6 (165-227)||(33517624-33517686)
chr6 (160-227)||(24210616-24210683)
chr6 (154-221)||(33648747-33648814)
chr6 (159-221)||(1215148-1215210)
chr6 (165-227)||(30803951-30804013)
chr6 (160-217)||(26463264-26463321)
chr6 (165-227)||(3059347-3059409)
chr6 (166-227)||(11434893-11434954)
chr6 (160-221)||(12407593-12407654)
chr6 (166-227)||(17734287-17734348)
chr6 (166-215)||(20651935-20651984)
chr6 (166-227)||(30337694-30337755)
[»] scaffold0031 (1 HSPs)
scaffold0031 (165-227)||(69055-69117)
[»] scaffold0005 (1 HSPs)
scaffold0005 (165-227)||(37839-37901)
[»] chr5 (22 HSPs)
chr5 (165-227)||(186509-186571)
chr5 (165-227)||(32242332-32242394)
chr5 (165-227)||(5993979-5994041)
chr5 (165-227)||(35512238-35512300)
chr5 (165-227)||(5024294-5024356)
chr5 (165-227)||(11047527-11047589)
chr5 (132-225)||(12904808-12904904)
chr5 (165-227)||(13962954-13963016)
chr5 (165-227)||(14194699-14194761)
chr5 (160-218)||(14848992-14849050)
chr5 (165-227)||(19892584-19892646)
chr5 (165-227)||(29646638-29646700)
chr5 (165-227)||(38442158-38442220)
chr5 (165-227)||(39453390-39453452)
chr5 (164-227)||(18247173-18247236)
chr5 (165-212)||(27587238-27587285)
chr5 (165-227)||(8322494-8322556)
chr5 (165-227)||(16157131-16157193)
chr5 (165-227)||(17202489-17202551)
chr5 (165-227)||(20814411-20814473)
chr5 (166-227)||(6301819-6301880)
chr5 (165-221)||(20840623-20840679)
[»] chr4 (29 HSPs)
chr4 (165-227)||(14801826-14801888)
chr4 (165-227)||(53701902-53701964)
chr4 (165-224)||(34765659-34765718)
chr4 (165-227)||(35028274-35028336)
chr4 (166-227)||(24349765-24349826)
chr4 (165-230)||(52909343-52909408)
chr4 (166-221)||(16605693-16605748)
chr4 (160-227)||(41582532-41582599)
chr4 (165-227)||(15507949-15508011)
chr4 (165-227)||(37976429-37976491)
chr4 (160-218)||(52298111-52298169)
chr4 (165-227)||(54086971-54087033)
chr4 (169-226)||(17356199-17356256)
chr4 (166-227)||(56014816-56014877)
chr4 (165-212)||(24711201-24711248)
chr4 (160-227)||(30642422-30642489)
chr4 (160-227)||(40388382-40388449)
chr4 (166-212)||(9400779-9400825)
chr4 (166-212)||(22566890-22566936)
chr4 (165-227)||(24411448-24411510)
chr4 (166-212)||(33247533-33247579)
chr4 (159-217)||(48529862-48529920)
chr4 (173-227)||(53129782-53129836)
chr4 (166-227)||(10781760-10781821)
chr4 (166-227)||(50418759-50418820)
chr4 (166-227)||(56015923-56015984)
chr4 (198-230)||(24411631-24411663)
chr4 (164-212)||(43155787-43155835)
chr4 (160-220)||(52298269-52298329)
[»] chr1 (34 HSPs)
chr1 (165-227)||(6367652-6367714)
chr1 (160-217)||(34850351-34850408)
chr1 (165-227)||(4960630-4960692)
chr1 (165-227)||(13914343-13914405)
chr1 (165-227)||(17662126-17662188)
chr1 (165-227)||(24009817-24009879)
chr1 (165-227)||(40210646-40210708)
chr1 (165-230)||(1103551-1103616)
chr1 (165-230)||(1841549-1841614)
chr1 (161-230)||(16970808-16970877)
chr1 (166-227)||(37578468-37578529)
chr1 (165-230)||(42248563-42248628)
chr1 (160-221)||(42267388-42267449)
chr1 (165-224)||(30711417-30711476)
chr1 (165-227)||(14879061-14879123)
chr1 (159-221)||(21444678-21444740)
chr1 (159-221)||(22103788-22103850)
chr1 (165-227)||(34464725-34464787)
chr1 (165-227)||(41098823-41098885)
chr1 (165-227)||(43758912-43758974)
chr1 (165-227)||(46163120-46163182)
chr1 (160-216)||(34849096-34849152)
chr1 (165-221)||(44523418-44523474)
chr1 (160-211)||(10304008-10304059)
chr1 (165-224)||(32917350-32917409)
chr1 (160-230)||(27999124-27999194)
chr1 (167-217)||(31197152-31197202)
chr1 (165-227)||(35152433-35152495)
chr1 (165-227)||(48779207-48779269)
chr1 (160-221)||(13245935-13245996)
chr1 (166-227)||(13914159-13914220)
chr1 (166-227)||(26024668-26024729)
chr1 (164-212)||(183482-183530)
chr1 (164-212)||(25647973-25648021)
[»] scaffold0347 (1 HSPs)
scaffold0347 (161-219)||(13695-13753)
[»] scaffold0295 (1 HSPs)
scaffold0295 (164-227)||(2232-2295)
[»] scaffold0181 (1 HSPs)
scaffold0181 (159-217)||(9389-9447)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31871253 - 31871337
Alignment:
Q  1 ttttcagacaagatttttaagtaccaactatatttcccgcgtcgttaaccgtatcaaacattcaggttcttaacagcgaaaatca 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  31871253 ttttcagacaagatttttaagtaccaacgatatttcccgcgtcgttaacggtatcaaacattcaggttcttaacaacgcaaatca 31871337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 16388864 - 16388802
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  16388864 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 16388802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 36928566 - 36928628
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  36928566 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 36928628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 31608849 - 31608790
Alignment:
Q  167 taatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatg 226  Q
    ||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||||||    
T  31608849 taatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatg 31608790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 35756672 - 35756734
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  35756672 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatga 35756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 39071766 - 39071825
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttga 224  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| || ||||||||||||||    
T  39071766 tttaatcatttaaaatttcgtccctctccccacttaatcactgccgcgtcactaatttga 39071825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 13186150 - 13186212
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| ||||||||||||||| ||||    
T  13186150 tttaatcatttaaaatttcgtctctctccccacttaatcactgccacgtcactaatttaatga 13186212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 28339302 - 28339245
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||||||||||||||||||| ||  ||||||| |||| |||||||||| |||||||||    
T  28339302 caaaatttaatcatttaaaaattggtccctcaacccagttaattactatcacgtcact 28339245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 4405998 - 4405939
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttga 224  Q
    ||||||||||||||||||| ||||||  |||| ||||| |||  ||||||||||||||||    
T  4405998 tttaatcatttaaaatttcgtccctcttcccacttaatcactgtcacgtcactaatttga 4405939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 20385659 - 20385710
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||||||||||||||||| ||||| | |||| ||||||||| ||||||||||    
T  20385659 ttaatcatttaaaatttcgtccctgagcccagttaattactgccacgtcact 20385710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 9499940 - 9499883
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcacta 218  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| |||  ||||||||||    
T  9499940 caaaatttaatcatttaaaatttgatccctc-ccccacttaatcactgtcacgtcacta 9499883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 36186405 - 36186343
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||| | ||||| ||| |||| | |||||||||||||    
T  36186405 tttaatcatttaaaatttcgtccctctccctacttaatcactgccacattactaatttgatga 36186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 40318302 - 40318240
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||| || || || ||||| ||| ||| ||||||||||||||||    
T  40318302 tttaatcatttaaaatttcgtccttctcctcacttaatcactgccatgtcactaatttgatga 40318240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 8747601 - 8747540
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||||| | |||| ||||| ||  |||||||| |||||||||||    
T  8747601 ttaatcatttaaaatttcgtcccttaacccacttaatcaccgccacgtcagtaatttgatga 8747540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 35449915 - 35449879
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaat 202  Q
    |||||||||||||||||| |||||| |||||||||||    
T  35449915 ttaatcatttaaaatttcgtccctctccccatttaat 35449879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 6848076 - 6848010
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||    
T  6848076 aaaatttaatcatttaaaatttcgtccatcaccccacttaattactaccacgtcagtaatttgatga 6848010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 10712813 - 10712875
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  10712813 tttaatcatttaaaatttcatccctctccccacttaatcactaccacgtcactaatttgatga 10712875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 36382251 - 36382313
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  36382251 tttaatcatttaaaatttcatccctctccccacttaatcactgccacgtcactaatttgatga 36382313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 15848178 - 15848243
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||||||||||    
T  15848178 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatgatgt 15848243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 2318248 - 2318310
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||||| | ||||||||||||||||||||    
T  2318248 tttaatcatttaaaatttcgtccctctccccacttaattaatgccacgtcactaatttgatga 2318310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 37895685 - 37895623
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  37895685 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 37895623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 6846869 - 6846939
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||| |||||||||||||||| ||||||  |||| ||||||||| |||||| | ||||||||||||||    
T  6846869 caaaattgaatcatttaaaatttcgtccctcttcccacttaattactgccacgttagtaatttgatgatgt 6846939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 39423605 - 39423667
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  39423605 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatga 39423667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 44714099 - 44714037
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  44714099 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatga 44714037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 25892484 - 25892549
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||| ||| |||||| ||||| ||||||||||||||||| |||||| | ||||||    
T  25892484 tttaatcatttaaaaattcgtccctctccccacttaattactaccacgtctctaattagctgatgt 25892549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 3653423 - 3653356
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||| ||||||||||||||||||| ||||||  || | ||||| ||||||||||||||||| ||||||    
T  3653423 caaagtttaatcatttaaaatttcgtccctcttccaagttaatcactaccacgtcactaatctgatga 3653356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 36479808 - 36479870
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||| || ||||| ||||| ||| ||| ||||||||||||||||    
T  36479808 tttaatcatttaaaatttcgtccatctccccacttaatcactgccatgtcactaatttgatga 36479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 36755183 - 36755245
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| |||  |||||||||||||||||||    
T  36755183 tttaatcatttaaaatttcgtctctctccccacttaatcactgtcacgtcactaatttgatga 36755245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 11689626 - 11689687
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    ||||||||||||| |||||||||| ||| || ||||| ||||| ||| ||||||||||||||    
T  11689626 caaaatttaatcacttaaaatttcgtccatctccccacttaatcactgccacgtcactaatt 11689687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 21370539 - 21370488
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||| |||||||||||| ||||| | |||| ||||||||||||||||||||    
T  21370539 ttaataatttaaaatttcgtccctgagcccaattaattactaccacgtcact 21370488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 44044205 - 44044256
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||||||||||||||||| ||||| | |||| ||||||||| ||||||||||    
T  44044205 ttaatcatttaaaatttcgtccctgagcccaattaattactgccacgtcact 44044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 10840560 - 10840622
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||||||||| |||| ||||||  |||| ||||| |||  |||||||||||||    
T  10840560 tcaaaatttaatcatttaaactttcgtccctcttcccacttaatcactgtcacgtcactaatt 10840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 11349547 - 11349506
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaat 202  Q
    ||||||||||||||||||||||| ||||||| |||| |||||    
T  11349547 aaaatttaatcatttaaaatttcgtccctcaacccagttaat 11349506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 11721433 - 11721372
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    ||||||||||||| |||||||||| || ||| ||||| ||||| |||  |||||||||||||    
T  11721433 caaaatttaatcacttaaaatttcgtctctctccccacttaatcactgtcacgtcactaatt 11721372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 28469346 - 28469284
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||    
T  28469346 tttaatcatttaaaatttcgtccctctccccacttaatcactaccacgtcactaatttgatga 28469284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 17203655 - 17203721
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||||||||||| |  ||||||||||| |||  ||||||| |||||||||||    
T  17203655 aaaatttaatcatttaaaatttcatccatatccccatttaatcactgtcacgtcagtaatttgatga 17203721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 32053481 - 32053419
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  |||||||||||||||||||    
T  32053481 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaatttgatga 32053419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 40379859 - 40379921
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| | | ||||||||||||||||||||    
T  40379859 tttaatcatttaaaatttcgtccctctccccacttaatcaatgccacgtcactaatttgatga 40379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 42731509 - 42731571
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  42731509 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatga 42731571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 10935884 - 10935946
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| | ||| ||||| ||| ||| ||||||||||||||||    
T  10935884 tttaatcatttaaaatttcgtccctctctccacttaatcactgccatgtcactaatttgatga 10935946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 27396933 - 27396871
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||  ||||||||||    
T  27396933 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcaagaatttgatga 27396871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 30128690 - 30128633
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||| |||||||| ||||||||| |||||| | |||||||||||||| ||||||||||    
T  30128690 caaagtttaatcacttaaaatttgatccctgagcccatttaattactgccacgtcact 30128633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 45010688 - 45010749
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatg 226  Q
    ||||||||||||||||||| ||| || ||||| ||||| ||| ||| |||||||||||||||    
T  45010688 tttaatcatttaaaatttcgtccatctccccacttaatcactgccaagtcactaatttgatg 45010749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 48789141 - 48789076
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    |||||||||||||||||||||||||| ||||| || || | |  || |||||||||||||||||||    
T  48789141 tttaatcatttaaaatttcatccctctccccacttgatcattgtcatgtcactaatttgatgatgt 48789076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 5457245 - 5457193
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||    
T  5457245 tttaatcatttaaaatttcgtccctcatcccagttaatcactgccacgtcact 5457193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 38643636 - 38643696
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||| |||||||||||| ||||| |||||| ||||| |||||||||  |||||||||||||    
T  38643636 aaaaattaatcatttaagatttcgtccctctccccacttaattactgtcacgtcactaatt 38643696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 12229415 - 12229348
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||| |||||||||| |||||||| ||||| | |||| ||||| ||| |||||||| |||||||||||    
T  12229415 caaagtttaatcattaaaaatttcgtcccttaacccacttaatgactgccacgtcattaatttgatga 12229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 2640516 - 2640454
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| |||  || ||||||||||||||||    
T  2640516 tttaatcatttaaaatttcgtctctctccccacttaatcactgtcatgtcactaatttgatga 2640454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 3914228 - 3914290
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||||||  || | ||||| ||| |||| |||||||||||||||    
T  3914228 tttaatcatttaaaatttcgtccctcttccaacttaatcactgccacatcactaatttgatga 3914290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 23181332 - 23181270
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| | ||| ||||| |||  || ||||||||||||||||    
T  23181332 tttaatcatttaaaatttcgtccctctctccacttaatcactgtcatgtcactaatttgatga 23181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 11397463 - 11397524
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||||||||||||  || |||| |||| ||||| |||  |||||||||||||    
T  11397463 caaaatttaatcatttaaaatttagtctctcatcccaattaatcactgtcacgtcactaatt 11397524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 17885719 - 17885780
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   |||| ||||| ||| ||||||||||||||||||||    
T  17885719 ttaatcatttaaaatttcgtcctttgacccagttaatcactgccacgtcactaatttgatga 17885780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18670206 - 18670149
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||| |||||||| |||||||||  ||||| | |||||||||||||| ||||||||||    
T  18670206 caaagtttaatcacttaaaatttggtccctaagcccatttaattactgccacgtcact 18670149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 22871399 - 22871460
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  22871399 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 22871460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 5455911 - 5455963
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccac 211  Q
    ||||| |||||||||||||||||||||||||   |||| ||||||||| ||||    
T  5455911 tcaaagtttaatcatttaaaatttcatccctacacccacttaattactgccac 5455963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 40758234 - 40758296
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||    
T  40758234 tttaatcatttaaaatttcgtccctctccccacttaatcactaccacgtcactaatttgatga 40758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 39399435 - 39399368
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||||| ||||||    
T  39399435 caaaatttaatcatttaaaatttcatctctctccccagttaatcactgccacgtcactaatctgatga 39399368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 9367832 - 9367893
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||    
T  9367832 ttaatcatttaaaatttcgtccctcatcccaattaatcactgccacgtcactaatttgatga 9367893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 33689718 - 33689655
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||||| |||||    
T  33689718 atttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaattcgatga 33689655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 54318005 - 54317907
Alignment:
Q  131 atgtattcgttaattccgacaagtt--ctctcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||| | ||||| ||  ||| |||||||||||||||||||||||| || ||| ||| | ||||| ||| ||||||||||||| ||||||    
T  54318005 atgtattcgttaatactgacaatttacctcccaaaatttaatcatttaaaatttcgtctctctccctaattaatcactgccacgtcactaatctgatga 54317907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 23458317 - 23458255
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||| |||||||||||||||    
T  23458317 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaatttgatga 23458255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 26463936 - 26463874
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  |||||||||||||||||||    
T  26463936 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaatttgatga 26463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 33156332 - 33156276
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||    
T  33156332 tttaatcatttaaaatttcgtccctccccccacttaatcactgccacgtcactaatt 33156276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 55052586 - 55052539
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  55052586 tttaatcatttaaaatttcgtccctctccccatttaatcactaccacg 55052539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 9294296 - 9294234
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  || ||||||||||||||||    
T  9294296 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatga 9294234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 41988047 - 41988112
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgat 225  Q
    |||||||||||||||||||||||| || ||| || || ||||| ||| |||| |||||||||||||    
T  41988047 caaaatttaatcatttaaaatttcgtctctctcctcacttaatcactgccacatcactaatttgat 41988112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 44654846 - 44654790
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcac 216  Q
    ||||||||||||| |||||||||| |||||| ||||||||||| |||  ||||||||    
T  44654846 caaaatttaatcacttaaaatttcgtccctctccccatttaatcactgtcacgtcac 44654790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 51994224 - 51994173
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcac 216  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||    
T  51994224 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcac 51994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 30380930 - 30380992
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    ||||||||||||||||||||||||| ||||||   ||| || || ||| ||||||||||||||    
T  30380930 tcaaaatttaatcatttaaaatttcgtccctctgtccacttgatcactgccacgtcactaatt 30380992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 32717119 - 32717065
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtca 215  Q
    |||| |||||||||||||||||| ||||||  |||| ||||||||| ||||||||    
T  32717119 aaaaattaatcatttaaaatttcgtccctcttcccaattaattactgccacgtca 32717065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 43384373 - 43384435
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| |||  || ||||||||||||||||    
T  43384373 tttaatcatttaaaatttcgtctctctccccacttaatcactgtcatgtcactaatttgatga 43384435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 20704515 - 20704572
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||||||||||| |||||||| | |||||| ||||| ||||| ||||||| ||||||    
T  20704515 caaaatttaatcacttaaaattccgtccctctccccacttaatcactaccatgtcact 20704572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 53756834 - 53756899
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| ||| ||  |||||||||| | |  || |||||||||||||||||||    
T  53756834 tttaatcatttaaaatttcgtccatcttcccatttaatcattgtcatgtcactaatttgatgatgt 53756899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 33647052 - 33647115
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||||| || ||| ||||||||||| ||| ||||||||||||||||||||    
T  33647052 atttaatcatttaaaatttcgtctctctccccatttaatcactgccacgtcactaatttgatga 33647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 30725849 - 30725911
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||||||||| ||| ||| ||||||||||||||||    
T  30725849 tttaatcatttaaaatttcgtccctctccccatttaatcactgccatgtcactaatttgatga 30725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 12080726 - 12080791
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| |||||||||||||||||||    
T  12080726 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatgatgt 12080791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 21628051 - 21627989
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  21628051 tttaatcatttaaaattttgtccctctccccacttaatcactgccacgtcactaatttgatga 21627989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 33517624 - 33517686
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| | ||||||||||||||||||    
T  33517624 tttaatcatttaaaatttcgtccctctccccacttaatcactgctacgtcactaatttgatga 33517686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 24210616 - 24210683
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||| |||||||||||||||||||||||||| ||||   |||| ||  ||||||||||||||||||||    
T  24210616 caaagtttaatcatttaaaatttcatccctctccccgcctaatcaccgccacgtcactaatttgatga 24210683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 33648814 - 33648747
Alignment:
Q  154 ttctctcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||| |||||||||||||| |||||||||| |||||| || || ||||||||| |||| |||||||||    
T  33648814 ttctgtcaaaatttaatcacttaaaatttcttccctctcctcacttaattactgccacatcactaatt 33648747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1215210 - 1215148
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||| |||||||||| |||||  ||||| ||||| ||| ||||||||||||||    
T  1215210 tcaaaatttaatcacttaaaatttcgtccctatccccacttaatcactgccacgtcactaatt 1215148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 30803951 - 30804013
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||  |||||||||||||||    
T  30803951 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatctcactaatttgatga 30804013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 26463264 - 26463321
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||| ||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||    
T  26463264 caaagtttaatcatttaaaatttcgtccctcatcccagttaatcactgccacgtcact 26463321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 3059347 - 3059409
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| || || ||||| ||| ||| ||||||||| ||||||    
T  3059347 tttaatcatttaaaatttcgtccctctcctcacttaatcactgccatgtcactaatgtgatga 3059409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 11434893 - 11434954
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   |||| ||||| ||| ||||||||||||||||||||    
T  11434893 ttaatcatttaaaatttcgtcctttgacccagttaatcactgccacgtcactaatttgatga 11434954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 12407593 - 12407654
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||| ||||||||||||||||||  ||||| | || | ||||||||| ||||||||||||||    
T  12407593 caaagtttaatcatttaaaatttggtccctgaacctagttaattactgccacgtcactaatt 12407654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 17734287 - 17734348
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  17734287 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 17734348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 20651984 - 20651935
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtca 215  Q
    |||||||||||||||||| ||||| | |||| ||||||||| ||||||||    
T  20651984 ttaatcatttaaaatttcgtccctgaacccagttaattactgccacgtca 20651935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 30337755 - 30337694
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  30337755 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 30337694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 69055 - 69117
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  69055 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 69117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 37901 - 37839
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  37901 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 37839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 186509 - 186571
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||| ||||||||||||||||    
T  186509 tttaatcatttaaaatttcgtccctccccccacttaatcactaccatgtcactaatttgatga 186571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 32242332 - 32242394
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  32242332 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 32242394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 5993979 - 5994041
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  5993979 tttaatcatttaaaatttcgtccctctccccacttaatcactgccatgtcactaatttgatga 5994041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 35512238 - 35512300
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||| |||||||||||||||    
T  35512238 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaatttgatga 35512300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 5024356 - 5024294
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| | |||| ||||| ||||| ||| |||| |||||||||||||||    
T  5024356 tttaatcatttaaaatttcgttcctctccccacttaatcactgccacatcactaatttgatga 5024294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 11047527 - 11047589
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||||||||||||||    
T  11047527 tttaatcatttaaaatttcgtctctctccccacttaatcactgccatgtcactaatttgatga 11047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 12904808 - 12904904
Alignment:
Q  132 tgtattcgttaattccgacaagtt---ctctcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgat 225  Q
    ||||||||||||| | ||||| ||   ||| ||||||||||| |||||||||||| |||||| ||||| ||||| | |  |||||||||||||||||    
T  12904808 tgtattcgttaatcctgacaatttgtcctcccaaaatttaataatttaaaatttcgtccctctccccacttaatcaatgtcacgtcactaatttgat 12904904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 13962954 - 13963016
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| || || ||||| |||  |||||||||||||||||||    
T  13962954 tttaatcatttaaaatttcgtccctctcctcacttaatcactgtcacgtcactaatttgatga 13963016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 14194761 - 14194699
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| | | ||||||||||||||||    
T  14194761 tttaatcatttaaaatttcgtccctctccccacttaatcactgctatgtcactaatttgatga 14194699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 14849050 - 14848992
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcacta 218  Q
    |||||||||||||||||||||||  |||||||||||| ||||| ||| |||| ||||||    
T  14849050 caaaatttaatcatttaaaatttggtccctcaccccacttaatcactgccacatcacta 14848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 19892646 - 19892584
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||  || ||||| ||||| ||| ||||||||||||||||||||    
T  19892646 tttaatcatttaaaatttcgtcattctccccacttaatcactgccacgtcactaatttgatga 19892584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 29646700 - 29646638
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  || ||||||||||||||||    
T  29646700 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatga 29646638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 38442158 - 38442220
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||| | |||||||||||||    
T  38442158 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacataactaatttgatga 38442220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 39453390 - 39453452
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  || ||||||||||||||||    
T  39453390 tttaatcatttaaaatttcgtccctctccccacttaatcactggcatgtcactaatttgatga 39453452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 18247173 - 18247236
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||| |||||| |||||| ||||| ||||| ||  ||| ||||||||||||||||    
T  18247173 atttaatcatttagaatttcgtccctctccccacttaatcaccgccatgtcactaatttgatga 18247236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 27587238 - 27587285
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||| |||||| ||||||||||| ||| |||||    
T  27587238 tttaatcatttaaaatttcgtccctctccccatttaatcactgccacg 27587285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 8322494 - 8322556
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  ||  |||||||||||||||    
T  8322494 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcatttcactaatttgatga 8322556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 16157193 - 16157131
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||||| ||||| |||||  || ||| ||||||||||||||||    
T  16157193 tttaatcatttaaaattttgtccctctccccacttaatccctgccatgtcactaatttgatga 16157131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 17202489 - 17202551
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||| ||||||||||||| |||| | ||||| ||||| ||| ||| ||||||||||||||||    
T  17202489 tttaagcatttaaaatttcgtccccctccccacttaatcactgccatgtcactaatttgatga 17202551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 20814473 - 20814411
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||||| ||| | ||||| ||| ||| ||||||||||||||||    
T  20814473 tttaatcatttaaaattttgtccctctccctacttaatcactgccatgtcactaatttgatga 20814411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 6301880 - 6301819
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  6301880 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 6301819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 20840623 - 20840679
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||| |||||||||||  |||||| ||||| ||||| ||| ||||||||||||||    
T  20840623 tttaatgatttaaaattttgtccctctccccacttaatcactgccacgtcactaatt 20840679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 14801826 - 14801888
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  14801826 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 14801888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 53701902 - 53701964
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  53701902 tttaatcatttaaaatttcttccctctccccacttaatcactgccacgtcactaatttgatga 53701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 34765718 - 34765659
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttga 224  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||||    
T  34765718 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttga 34765659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 35028336 - 35028274
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| ||||||||||||||||||||    
T  35028336 tttaatcatttaaaatttcgtcactctccccacttaatcactgccacgtcactaatttgatga 35028274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 24349765 - 24349826
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||| ||||||    
T  24349765 ttaatcatttaaaatttcgtccctctccccagttaatcactgccacgtcactaatctgatga 24349826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 52909343 - 52909408
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| ||| || ||||| ||||| ||| ||| |||||||||||||||||||    
T  52909343 tttaatcatttaaaatttcgtccatctccccacttaatcactgccatgtcactaatttgatgatgt 52909408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 16605693 - 16605748
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||    
T  16605693 ttaatcatttaaaatttcgtccctccccccacttaatcactgccacgtcactaatt 16605748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 41582532 - 41582599
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||| |||||||||||||||||| ||||||| | || ||||| | | ||||||||||||||||||||    
T  41582532 caaaagttaatcatttaaaatttcgtccctcatcacagttaatcattgccacgtcactaatttgatga 41582599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 15508011 - 15507949
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| || |||||||||||||||||    
T  15508011 tttaatcatttaaaatttcgtctctctccccacttaatcactgccgcgtcactaatttgatga 15507949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 37976491 - 37976429
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| ||| ||||||||||||||||    
T  37976491 tttaatcatttaaaatttcgtcactctccccacttaatcactgccatgtcactaatttgatga 37976429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 52298111 - 52298169
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcacta 218  Q
    |||||||||||||||||||||||| || ||| ||||| ||||| ||| |||||||||||    
T  52298111 caaaatttaatcatttaaaatttcgtctctctccccacttaatcactgccacgtcacta 52298169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 54087033 - 54086971
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| ||||| |||| || ||||||||||||||||    
T  54087033 tttaatcatttaaaatttcgtctctctccccacttaatcactaacatgtcactaatttgatga 54086971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 17356256 - 17356199
Alignment:
Q  169 atcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatg 226  Q
    ||||||||||||||| |||||| ||||| ||||| |||  ||||||||||||||||||    
T  17356256 atcatttaaaatttcgtccctctccccacttaatcactgtcacgtcactaatttgatg 17356199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 56014816 - 56014877
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||||||| | || ||||| ||| |||||||||| |||||||||    
T  56014816 ttaatcatttaaaatttcgtccctcatcacagttaatcactgccacgtcactgatttgatga 56014877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 24711201 - 24711248
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||||||||    
T  24711201 tttaatcatttaaaatttcgtccctctccccacttaatcactaccacg 24711248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 30642489 - 30642422
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||| ||||||||||||||||||| |||||   |||| ||||| ||| |||||||| |||||||||||    
T  30642489 caaagtttaatcatttaaaatttcgtcccttgacccacttaatgactgccacgtcattaatttgatga 30642422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 40388449 - 40388382
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||| |||||||||||||||||| ||||| | | || ||||| | | ||||||||||||||||||||    
T  40388449 caaaagttaatcatttaaaatttcgtccctgatcacagttaatcattgccacgtcactaatttgatga 40388382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 9400825 - 9400779
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  9400825 ttaatcatttaaaatttcatccctctccccacttaatcactgccacg 9400779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 22566890 - 22566936
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  22566890 ttaatcatttaaaatttcatccctctccccacttaatcactgccacg 22566936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 24411448 - 24411510
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||  ||| ||||||  |||| ||||| ||| ||||||||||||||||||||    
T  24411448 tttaatcatttaaagattcgtccctcttcccacttaatcactcccacgtcactaatttgatga 24411510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 33247579 - 33247533
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| |||||    
T  33247579 ttaatcatttaaaatttcatccctctccccacttaatcactgccacg 33247533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 48529920 - 48529862
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||||||||||||||||||||||  |||||| | ||| ||||| ||| ||||||||||    
T  48529920 tcaaaatttaatcatttaaaattttgtccctctctccacttaatcactgccacgtcact 48529862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 53129836 - 53129782
Alignment:
Q  173 tttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||| |||||| ||||| ||||| ||| |||| |||||||||||||||    
T  53129836 tttaaaatttcgtccctctccccacttaatcactgccacatcactaatttgatga 53129782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 10781821 - 10781760
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| |||||| ||||| ||||  |||  |||||||||||| ||||||    
T  10781821 ttaatcatttaaaatttcgtccctctccccagttaaccactgtcacgtcactaatctgatga 10781760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 50418759 - 50418820
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  50418759 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 50418820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 56015984 - 56015923
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| ||| | || ||||| ||| |||||||||| |||||||||    
T  56015984 ttaatcatttaaaatttcgtccttcatcacagttaatcactgccacgtcactgatttgatga 56015923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24411663 - 24411631
Alignment:
Q  198 ttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||| |||||||||||||||||||||||||||    
T  24411663 ttaatcactaccacgtcactaatttgatgatgt 24411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 43155835 - 43155787
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||| |||||    
T  43155835 atttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 43155787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 52298329 - 52298269
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaat 220  Q
    |||||||||||||||||||||||| | |||  |||||||||||  ||| || |||||||||    
T  52298329 caaaatttaatcatttaaaatttcgttcctatccccatttaatctctatcatgtcactaat 52298269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 6367652 - 6367714
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||    
T  6367652 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaatttgatga 6367714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 34850408 - 34850351
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  34850408 caaaatttaatcatttaaaatttcatccctctccccacttaatcactgccacgtcact 34850351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 4960630 - 4960692
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||||||  |||| ||||| ||| ||||||||||||||||||||    
T  4960630 tttaatcatttaaaatttcgtccctcttcccacttaatcactgccacgtcactaatttgatga 4960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 13914405 - 13914343
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| | ||| ||| ||||||||||||||||||||    
T  13914405 tttaatcatttaaaatttcgtccctctccccactaaatcactgccacgtcactaatttgatga 13914343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 17662188 - 17662126
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| ||||||  |||| ||||| ||| ||||||||||||||||||||    
T  17662188 tttaatcatttaaaatttcgtccctcttcccacttaatcactgccacgtcactaatttgatga 17662126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 24009879 - 24009817
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||| |||||||||||||||    
T  24009879 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacatcactaatttgatga 24009817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 40210708 - 40210646
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||| |||||||    
T  40210708 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcactaaattgatga 40210646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 1103551 - 1103616
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  || |||||||||||||||||||    
T  1103551 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatgatgt 1103616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 1841549 - 1841614
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| ||| |||||||||||||||||||    
T  1841549 tttaatcatttaaaatttcgtcactctccccacttaatcactgccatgtcactaatttgatgatgt 1841614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 16970877 - 16970808
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| | | ||| |||| ||||||||||||||    
T  16970877 aaaatttaatcatttaaaatttcgtccctctccccacttaatcattgccatgtcagtaatttgatgatgt 16970808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 37578529 - 37578468
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| || ||| ||||| ||||| ||| ||||||||||||||||||||    
T  37578529 ttaatcatttaaaatttcgtcactctccccacttaatcactgccacgtcactaatttgatga 37578468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 42248563 - 42248628
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| |||||| ||||||||| ||||||    
T  42248563 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtgactaatttgttgatgt 42248628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 42267388 - 42267449
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||||||| ||||| || ||| ||||| ||||| ||||||||||||||||||    
T  42267388 caaaatttaatcatttaatatttcgtctctctccccacttaatcactaccacgtcactaatt 42267449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 30711417 - 30711476
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttga 224  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||| ||| |||||||||||||    
T  30711417 tttaatcatttaaaatttcgtccctcgccccacttaatcactgccatgtcactaatttga 30711476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 14879061 - 14879123
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| ||||| ||||| |||  || ||||||||||||||||    
T  14879061 tttaatcatttaaaatttcgtccctctccccacttaatcactgtcatgtcactaatttgatga 14879123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 21444678 - 21444740
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||| |||||||||| ||| || ||||| ||||| ||| ||||||||||||||    
T  21444678 tcaaaatttaatcacttaaaatttcgtccatctccccacttaatcactgccacgtcactaatt 21444740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 22103850 - 22103788
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||| |||||||||| |||||| | ||| ||||| ||| ||||||||||||||    
T  22103850 tcaaaatttaatcacttaaaatttcgtccctctctccacttaatcactgccacgtcactaatt 22103788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 34464787 - 34464725
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||||| ||||| ||||| ||| ||| ||||||||||||||||    
T  34464787 tttaatcatttaaaattttgtccctctccccacttaatcactgccatgtcactaatttgatga 34464725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 41098823 - 41098885
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||| | ||||| ||||| |||||||| |||||||||||||||    
T  41098823 tttaatcatttaaaattttgtccccctccccacttaatcactaccacatcactaatttgatga 41098885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 43758912 - 43758974
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| |||||| | ||| ||||| ||| ||| ||||||||||||||||    
T  43758912 tttaatcatttaaaatttcgtccctctctccacttaatcactgccatgtcactaatttgatga 43758974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 46163120 - 46163182
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||| || ||| ||||| |||||||||  || ||||||||||||||||    
T  46163120 tttaatcatttaaaatttcgtctctctccccacttaattactgtcatgtcactaatttgatga 46163182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 34849096 - 34849152
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcac 216  Q
    |||||||||||||||||||||||| |||||| ||||  ||||| ||| |||||||||    
T  34849096 caaaatttaatcatttaaaatttcgtccctctcccctcttaatcactgccacgtcac 34849152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 44523474 - 44523418
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    |||||||||||||||||||||||||| |  || ||||| ||| ||||||||||||||    
T  44523474 tttaatcatttaaaatttcatccctcccttcacttaatcactgccacgtcactaatt 44523418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 10304008 - 10304059
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccac 211  Q
    |||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||    
T  10304008 caaaatttaatcatttaaaatttcgtccctctccccacttaatcactgccac 10304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 32917350 - 32917409
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttga 224  Q
    ||||||||||||||||||| || ||| ||||| ||||| ||| |||| ||||||||||||    
T  32917350 tttaatcatttaaaatttcgtctctctccccacttaatcactgccacatcactaatttga 32917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 27999194 - 27999124
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatgatgt 230  Q
    |||||||||||||||| ||||||| || |||  |||| ||||| ||| |||| ||||||||||| ||||||    
T  27999194 caaaatttaatcattttaaatttcgtctctcttcccacttaatcactgccacctcactaatttgctgatgt 27999124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 31197152 - 31197202
Alignment:
Q  167 taatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    ||||||||||||||||||||||||| || | ||||| ||| ||||||||||    
T  31197152 taatcatttaaaatttcatccctcatcctagttaatcactgccacgtcact 31197202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 35152433 - 35152495
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||||  |||||| ||||| ||||| ||| | | ||||||||||||||||    
T  35152433 tttaatcatttaaaattttgtccctctccccacttaatcactgcaatgtcactaatttgatga 35152495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 48779207 - 48779269
Alignment:
Q  165 tttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    ||||||||||||||||| | | |||| ||||| ||||| ||| ||| ||||||||||||||||    
T  48779207 tttaatcatttaaaattcctttcctctccccacttaatcactgccatgtcactaatttgatga 48779269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 13245935 - 13245996
Alignment:
Q  160 caaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatt 221  Q
    ||||||||||||| |||||||||  |||||| ||||| ||||| |||  |||||||||||||    
T  13245935 caaaatttaatcacttaaaattttgtccctctccccacttaatcactgtcacgtcactaatt 13245996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 13914159 - 13914220
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || | ||||| ||||||||||||||||||||||||    
T  13914159 ttaatcatttaaaatttcgtcctttgaccaacttaatcactaccacgtcactaatttgatga 13914220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 26024729 - 26024668
Alignment:
Q  166 ttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||| ||| |   || ||||||| ||| ||||||||||||||||||||    
T  26024729 ttaatcatttaaaatttcgtcctttgaccaatttaatcactgccacgtcactaatttgatga 26024668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 183530 - 183482
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||| |||||    
T  183530 atttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 25647973 - 25648021
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacg 212  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||| |||||    
T  25647973 atttaatcatttaaaatttcgtccctctccccacttaatcactgccacg 25648021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 13695 - 13753
Alignment:
Q  161 aaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaa 219  Q
    |||| |||||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||    
T  13695 aaaaattaatcatttaagatttcgtccctctccccacttaatcactaccacgtcactaa 13753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 2232 - 2295
Alignment:
Q  164 atttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcactaatttgatga 227  Q
    |||||||||||||||||||  |||||| ||||| ||||| ||| ||| |||| |||||||||||    
T  2232 atttaatcatttaaaattttgtccctctccccacttaatcactgccatgtcaataatttgatga 2295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 9447 - 9389
Alignment:
Q  159 tcaaaatttaatcatttaaaatttcatccctcaccccatttaattactaccacgtcact 217  Q
    |||||||||||||| |||||| ||  ||||||| |||| ||||||||| ||||||||||    
T  9447 tcaaaatttaatcacttaaaaattggtccctcagcccagttaattactgccacgtcact 9389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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