View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_12 (Length: 223)
Name: NF20987_low_12
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 1855314 - 1855133
Alignment:
| Q |
19 |
aaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaatt |
118 |
Q |
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| T |
1855314 |
aaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaagtgagcataaatt |
1855215 |
T |
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| Q |
119 |
tggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccaca |
200 |
Q |
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| T |
1855214 |
tggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccaca |
1855133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 1844913 - 1844992
Alignment:
| Q |
127 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtata |
206 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtata |
1844992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 1817875 - 1818039
Alignment:
| Q |
20 |
aaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaattt |
119 |
Q |
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| T |
1817875 |
aaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaattttgagttgtttacacaggtgagttcaaattt |
1817974 |
T |
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| Q |
120 |
ggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaa |
184 |
Q |
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| T |
1817975 |
tgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaa |
1818039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 37566841 - 37566744
Alignment:
| Q |
19 |
aaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcataaa |
116 |
Q |
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| T |
37566841 |
aaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagcttaaa |
37566744 |
T |
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