View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_3 (Length: 348)
Name: NF20987_low_3
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 10640759 - 10640896
Alignment:
| Q |
10 |
aagaatataactcgggtttctcgtatcttttagagaaaaattattgcctaaagtagtcttaaatttgtgttgaaagacgacggtatacctcctacgatat |
109 |
Q |
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| T |
10640759 |
aagaaaataacttgggtttctcgtatcttctagagaaaaattattggctaaagtagtcttaaatttgtgtcgaaagacgacggtatacctcctaggatat |
10640858 |
T |
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| Q |
110 |
tgtgtcatttaagaatgcattgtttacgaagaactatt |
147 |
Q |
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| T |
10640859 |
tgtgtcatttaagaatgcattgtttacgaagaactatt |
10640896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 10641051 - 10641234
Alignment:
| Q |
144 |
tattgaaatgagaatgagaagggtgaagacttctca---aatgtagtttgtatagtcatttaagtcaattcgtcagtttattttannnnnnncaatttgg |
240 |
Q |
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| T |
10641051 |
tattgaaatgagaatgagaagggtgaagacttctcatcaaatgtagtttgtatagtc-------tcaattcgtcagtttattttatttttttcaatttgg |
10641143 |
T |
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| Q |
241 |
tgttggttttgaatttatatttaataaattgttcttgaattcaataagac-ttttttctctcattatctccattaagtcaatggatggttt |
330 |
Q |
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| T |
10641144 |
tgttggttttgaatttatatttaataaattgttcttgaattcaataagactttttttctcttattatcttcattaagtcaatggattgttt |
10641234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 10641759 - 10641834
Alignment:
| Q |
233 |
caatttggtgttggttttgaatttatatttaataaattgttcttgaattcaataagactttt-ttctctcattatct |
308 |
Q |
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| T |
10641759 |
caatttggtgttggttttgaa-ttatttttagtcaattgttcttgaattcaataaggtttttaatctctcattatct |
10641834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 8255462 - 8255517
Alignment:
| Q |
233 |
caatttggtgttggttttgaatttatatttaataaattgttcttgaattcaataag |
288 |
Q |
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| T |
8255462 |
caatttgatgttggttttaaatttattttgaatatattgttctcgaattcaataag |
8255517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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