View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_4 (Length: 330)
Name: NF20987_low_4
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 5779002 - 5779307
Alignment:
| Q |
17 |
ataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacggt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5779002 |
ataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatatgcatttgcaagatacggt |
5779101 |
T |
|
| Q |
117 |
ggcaaccgaaatcatgggccaggctacatataggataaacatcact---atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5779102 |
ggcaaccgaaatcatgggccaggctacatataggataaacatcactgtgatggttaacggctctgtggccgtcagcaacaacattgtccgagctcttgtt |
5779201 |
T |
|
| Q |
214 |
actcggactttgtatgatcgctctccagttgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgtgcccatcacctccgatgtcaccg |
313 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| |
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| T |
5779202 |
actcggactttgtatgatcgctctccaatcgctgtctacgctgtctccaaggtgttgatgccgaaagagcttcccgcgctcatcacctctgatgtcaccg |
5779301 |
T |
|
| Q |
314 |
ccccta |
319 |
Q |
| |
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|||||| |
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| T |
5779302 |
ccccta |
5779307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 5817277 - 5817548
Alignment:
| Q |
17 |
ataacaagtatttcgttctcaaatgtcatatgttgaaagaatatttgcctcctgctgtccttcgcaaaattgccaatgatacgcatttgcaagatacggt |
116 |
Q |
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||||||||||||| |||||| | |||||||| |||| ||||||||| |||| || ||| ||| | |||||| ||||| | ||||||||||| | ||| |
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| T |
5817277 |
ataacaagtattttgttctcgagtgtcatatattgagagaatatttttctcccgccgtctttccccaaattgtcaatgtttggcatttgcaagtcatggt |
5817376 |
T |
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| Q |
117 |
ggcaaccgaaatcatgggccaggctacatataggataaacatcact---atgcttaacggctctgtggccgtcagcaacaacattgtccgagctctcgtt |
213 |
Q |
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|||| | |||||||||| |||| || ||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
5817377 |
ggcagtcaaaatcatggggcaggataaatatatgataaacatcactgcaatggttaacggctctgtggccatcagcaacaacattgttcgagctctcgtt |
5817476 |
T |
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| Q |
214 |
actcggactttgtatgatcgctctccagttgctgtctacgctgtctccaaggtgttgatgccgaaagagctt |
285 |
Q |
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||| |||| |||||||||||||||| |||| ||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
5817477 |
acttggacattgtatgatcgctctctggttgttgtttacgccttctccaaggtgttgatgcccaaagagctt |
5817548 |
T |
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