View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_5 (Length: 321)
Name: NF20987_low_5
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 31871273 - 31870964
Alignment:
| Q |
1 |
cttaaaaatcttgtctgaaaattctccgtaatcatttcctcttatttctcctcaacgccacgtgtcatttcttccttcatcgttctttttccaaaat--- |
97 |
Q |
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| T |
31871273 |
cttaaaaatcttgtctgaaaattctccgtaatcatttcctcttctttctccttaacgccacgtgtcatttcttccttcatcgttctttttcattcatctc |
31871174 |
T |
|
| Q |
98 |
---tattcattcattctttcagactgtaactgtaactaattactaacaataacaatgcaagaagaaaaagaacattcatcaatggattctcaaaatccaa |
194 |
Q |
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| | | |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31871173 |
tggtttcgaatcattcattcacactgtaactgtaactaataactaacaataacaatgcaagaagaaaaagaacattcatcaatggattctcaaaatccaa |
31871074 |
T |
|
| Q |
195 |
acaacaaaaactctttatacccacaaatcatagattccaaccccgaagcatcctcacccttcatctctaaccctaacacaacaacctcttcctctctcta |
294 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31871073 |
acaacaaaaactctttatacccacaaatcatagattccaaccccgaagcatcctcacccttcatctctaaccctaacacaacaacctcttcctctctcta |
31870974 |
T |
|
| Q |
295 |
cccttccatc |
304 |
Q |
| |
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|||||||||| |
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| T |
31870973 |
cccttccatc |
31870964 |
T |
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