View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20987_low_6 (Length: 276)
Name: NF20987_low_6
Description: NF20987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20987_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 1994927 - 1995177
Alignment:
| Q |
18 |
gaaggtttcacaattgagttttcaaaagacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatgagagagt |
117 |
Q |
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| T |
1994927 |
gaaggtttcataattgagttttcaaatgacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatgagagagt |
1995026 |
T |
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| Q |
118 |
tggaactattgctactcttgagaatgttctctagaattgtggggatgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattg |
217 |
Q |
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| T |
1995027 |
tggaactattgctactcttgagaatgttctcttgaattgtggggatgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattg |
1995126 |
T |
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| Q |
218 |
agaaatagaattatcaccctcaaaagagaaacatgattgttgcatattctt |
268 |
Q |
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| T |
1995127 |
agaaatagaattatcaccctcaaaagagaaacatgattgttgcatattctt |
1995177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 1987968 - 1988061
Alignment:
| Q |
17 |
agaaggtttcacaattgagttttcaaaagacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatg |
110 |
Q |
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| T |
1987968 |
agaaggttgcatagttgagttttcaaaagataaaatgtattgagaaggtggtaattgttgtgaattagtagcccaagtatattcttgagcaatg |
1988061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 1988081 - 1988136
Alignment:
| Q |
163 |
tgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattgagaa |
221 |
Q |
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| T |
1988081 |
tgacacaaacattgtcaacaatattattc---atatattgtatggttgaagattgagaa |
1988136 |
T |
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