View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20988_high_10 (Length: 237)

Name: NF20988_high_10
Description: NF20988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20988_high_10
NF20988_high_10
[»] chr3 (18 HSPs)
chr3 (102-221)||(20257612-20257731)
chr3 (149-221)||(31365111-31365182)
chr3 (143-217)||(42799883-42799957)
chr3 (146-217)||(24085258-24085328)
chr3 (149-216)||(31365232-31365298)
chr3 (147-217)||(21367747-21367816)
chr3 (147-222)||(18405752-18405826)
chr3 (144-202)||(25447163-25447220)
chr3 (143-217)||(42747699-42747772)
chr3 (145-224)||(32582813-32582888)
chr3 (144-217)||(39980809-39980881)
chr3 (170-217)||(37389263-37389310)
chr3 (186-217)||(43046745-43046776)
chr3 (180-213)||(35394713-35394746)
chr3 (180-217)||(46778144-46778181)
chr3 (143-211)||(20170631-20170698)
chr3 (185-217)||(34637943-34637975)
chr3 (180-216)||(44060995-44061031)
[»] chr1 (23 HSPs)
chr1 (143-217)||(2295176-2295249)
chr1 (147-217)||(1432595-1432664)
chr1 (134-217)||(38001675-38001757)
chr1 (144-217)||(3233933-3234005)
chr1 (143-217)||(34795363-34795436)
chr1 (157-217)||(36514607-36514666)
chr1 (145-217)||(37617384-37617455)
chr1 (145-217)||(50644174-50644245)
chr1 (144-215)||(33204312-33204382)
chr1 (152-210)||(6102240-6102297)
chr1 (143-217)||(14576571-14576644)
chr1 (143-217)||(38247407-38247480)
chr1 (143-215)||(14385710-14385781)
chr1 (142-217)||(5721005-5721079)
chr1 (170-221)||(38018307-38018358)
chr1 (146-217)||(39976130-39976200)
chr1 (143-217)||(473243-473316)
chr1 (147-217)||(2777971-2778040)
chr1 (187-217)||(9572061-9572091)
chr1 (143-208)||(2295280-2295344)
chr1 (188-221)||(4445783-4445816)
chr1 (180-217)||(49938827-49938864)
chr1 (189-217)||(48536653-48536681)
[»] chr4 (22 HSPs)
chr4 (142-217)||(55437156-55437230)
chr4 (143-217)||(54426123-54426196)
chr4 (143-217)||(21731573-21731646)
chr4 (144-217)||(7367972-7368045)
chr4 (144-222)||(8705016-8705093)
chr4 (145-211)||(24169349-24169414)
chr4 (180-217)||(25904176-25904213)
chr4 (145-217)||(39603090-39603160)
chr4 (146-217)||(15173223-15173293)
chr4 (143-210)||(18815110-18815176)
chr4 (188-227)||(22471343-22471382)
chr4 (143-217)||(23319933-23320004)
chr4 (143-214)||(25571342-25571412)
chr4 (158-217)||(40174637-40174695)
chr4 (145-207)||(21043155-21043216)
chr4 (144-214)||(27043748-27043817)
chr4 (143-205)||(44797972-44798033)
chr4 (147-213)||(52315118-52315183)
chr4 (176-217)||(29913027-29913068)
chr4 (180-217)||(49940120-49940157)
chr4 (144-207)||(11264390-11264453)
chr4 (186-222)||(50681048-50681084)
[»] chr8 (21 HSPs)
chr8 (143-217)||(30251371-30251444)
chr8 (144-212)||(36963272-36963339)
chr8 (143-217)||(35643905-35643978)
chr8 (143-213)||(38602411-38602480)
chr8 (143-217)||(38648431-38648504)
chr8 (147-217)||(43717855-43717924)
chr8 (145-217)||(2487927-2487999)
chr8 (142-203)||(15180633-15180693)
chr8 (170-217)||(26771345-26771392)
chr8 (145-212)||(44792741-44792807)
chr8 (180-217)||(28763448-28763485)
chr8 (154-217)||(1058005-1058067)
chr8 (149-215)||(6525899-6525964)
chr8 (145-215)||(9130238-9130307)
chr8 (180-222)||(27754478-27754520)
chr8 (179-217)||(30151177-30151215)
chr8 (143-217)||(43045642-43045715)
chr8 (180-217)||(6882007-6882044)
chr8 (144-213)||(42893408-42893476)
chr8 (145-217)||(1096570-1096641)
chr8 (145-201)||(30657696-30657751)
[»] chr5 (20 HSPs)
chr5 (143-217)||(10640033-10640106)
chr5 (142-217)||(16937799-16937873)
chr5 (144-217)||(32941549-32941622)
chr5 (153-217)||(15015923-15015986)
chr5 (146-217)||(9107170-9107240)
chr5 (144-217)||(1773024-1773094)
chr5 (143-220)||(15246910-15246986)
chr5 (157-213)||(12425657-12425712)
chr5 (145-217)||(39594887-39594958)
chr5 (145-217)||(41419399-41419470)
chr5 (145-217)||(41534518-41534589)
chr5 (139-214)||(7674730-7674804)
chr5 (186-217)||(16457938-16457969)
chr5 (186-217)||(41981662-41981693)
chr5 (143-217)||(32010025-32010098)
chr5 (143-217)||(42100391-42100464)
chr5 (152-217)||(3520657-3520721)
chr5 (148-217)||(11064746-11064814)
chr5 (143-216)||(19460243-19460315)
chr5 (180-213)||(39248182-39248215)
[»] chr2 (20 HSPs)
chr2 (144-217)||(2142734-2142806)
chr2 (145-217)||(30331831-30331902)
chr2 (143-217)||(27317459-27317532)
chr2 (147-217)||(44590104-44590173)
chr2 (143-217)||(26143559-26143630)
chr2 (142-217)||(42659127-42659201)
chr2 (143-217)||(4607005-4607078)
chr2 (143-217)||(31744378-31744451)
chr2 (145-215)||(39073621-39073690)
chr2 (147-217)||(42419873-42419942)
chr2 (143-211)||(15305760-15305827)
chr2 (145-217)||(41812011-41812082)
chr2 (145-208)||(3312166-3312228)
chr2 (180-214)||(24101011-24101045)
chr2 (146-211)||(40682312-40682379)
chr2 (133-217)||(13866957-13867041)
chr2 (188-217)||(32837402-32837431)
chr2 (180-217)||(36534848-36534885)
chr2 (145-217)||(15757577-15757648)
chr2 (143-215)||(42868398-42868469)
[»] chr7 (18 HSPs)
chr7 (143-217)||(48470124-48470197)
chr7 (145-222)||(20526521-20526597)
chr7 (143-213)||(45593612-45593682)
chr7 (143-217)||(4970709-4970782)
chr7 (139-217)||(19302476-19302553)
chr7 (145-211)||(22283565-22283630)
chr7 (147-213)||(45338537-45338602)
chr7 (180-217)||(21568448-21568485)
chr7 (147-215)||(18765366-18765433)
chr7 (170-217)||(19214349-19214396)
chr7 (187-217)||(420440-420470)
chr7 (143-217)||(5947321-5947394)
chr7 (180-217)||(20526882-20526919)
chr7 (180-217)||(44989630-44989667)
chr7 (156-213)||(46280210-46280266)
chr7 (144-217)||(46407313-46407385)
chr7 (145-217)||(33266405-33266476)
chr7 (143-211)||(39907887-39907954)
[»] chr6 (9 HSPs)
chr6 (145-217)||(10645304-10645375)
chr6 (143-213)||(848073-848141)
chr6 (143-222)||(30641820-30641898)
chr6 (143-217)||(30926599-30926672)
chr6 (180-217)||(2455068-2455105)
chr6 (180-217)||(31813241-31813278)
chr6 (144-217)||(34404644-34404716)
chr6 (145-217)||(4163233-4163304)
chr6 (145-217)||(4224854-4224925)
[»] scaffold0057 (1 HSPs)
scaffold0057 (186-215)||(44115-44144)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 20257731 - 20257612
Alignment:
Q  102 cactaataaaccaaactccatccattcttgctaattaagaacctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgttt 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20257731 cactaataaaccaaactccatccattcttgctaattaaggacctgtttggattggcttatttgagttttatctacagccataaattttgtgagactgttt 20257632  T
Q  202 gggagaacttatgaaagcag 221  Q
    ||||||||||||||||||||    
T  20257631 gggagaacttatgaaagcag 20257612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 31365111 - 31365182
Alignment:
Q  149 tggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcag 221  Q
    |||||||||||||||||| | ||||||  | ||||| ||||||||||||||||||||||||||||||||||||    
T  31365111 tggattggcttatttgagct-tatctattggcataagttttgtgagactgtttgggagaacttatgaaagcag 31365182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 42799883 - 42799957
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | ||||||| | ||||  |||||||| ||| |||||||||||||||||||    
T  42799883 cctgtttggattggcttatttgagctttatctactgacatatgttttgtgaaactctttgggagaacttatgaaa 42799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 24085258 - 24085328
Alignment:
Q  146 gtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||| | ||||||| | ||||| ||||||||||||| || |||||||||||||||    
T  24085258 gtttggattggcttatttgagct-tatctaccggcataagttttgtgagactggtttggagaacttatgaaa 24085328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 31365232 - 31365298
Alignment:
Q  149 tggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaa 216  Q
    |||||||||||||||||||| ||||||  | ||||| |||||||| ||||||||||||||||||||||    
T  31365232 tggattggcttatttgagtt-tatctattggcataatttttgtgacactgtttgggagaacttatgaa 31365298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 21367816 - 21367747
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||| | |||||||   ||||| ||||||| ||||||||||||||||||||||||    
T  21367816 tttggattggcttatttgagat-tatctaccagcataagttttgtgggactgtttgggagaacttatgaaa 21367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 18405752 - 18405826
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    |||||||||| ||||||||| | ||||||| | ||||| |||||||||||||||||  ||||||||||||| ||||    
T  18405752 tttggattggtttatttgagct-tatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacagt 18405826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 25447163 - 25447220
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttg 202  Q
    |||||||||||| |||||||||||| ||||||| | ||||| |||||||||||||||||    
T  25447163 ctgtttggattgacttatttgagtt-tatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 42747699 - 42747772
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||| ||| |||||||||||| |||||||  |||||| | ||||||||||||||  ||||||||||||||    
T  42747699 cctgtttggtttgacttatttgagtt-tatctacttccataagtattgtgagactgtttttgagaacttatgaaa 42747772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 32582888 - 32582813
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcagtga 224  Q
    ||||||||||| |||||||||||| |||||||  |||||| ||||   |||||||||||||||||| |||||| ||||||    
T  32582888 tgtttggattgacttatttgagtt-tatctactaccataagtttt---agactgtttgggagaactcatgaaaacagtga 32582813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 39980881 - 39980809
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||| |||||| | |||||||   ||||| ||||||||||||||||  ||||||||||||||    
T  39980881 ctgtttggattggcttgtttgagct-tatctactagcataagttttgtgagactgtttaagagaacttatgaaa 39980809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 37389310 - 37389263
Alignment:
Q  170 tatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||| ||||| |||||||||||| || ||||||||||||||||    
T  37389310 tatctacagacataagttttgtgagactcttcgggagaacttatgaaa 37389263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Complemental strand, 43046776 - 43046745
Alignment:
Q  186 ttttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||||||||||    
T  43046776 ttttgtgagactgtttgggagaacttatgaaa 43046745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 35394713 - 35394746
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttat 213  Q
    |||||||||| |||||||||||||||||||||||    
T  35394713 cataaattttatgagactgtttgggagaacttat 35394746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 46778144 - 46778181
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| || ||||||||||||||||||||    
T  46778144 cataaattttgtgaaaccgtttgggagaacttatgaaa 46778181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 20170631 - 20170698
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    |||||||||||||||||||||||| | ||||||  | ||||| ||| |||||||||||||  |||||||    
T  20170631 cctgtttggattggcttatttgagct-tatctagtgacataagtttagtgagactgtttgttagaactt 20170698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 34637943 - 34637975
Alignment:
Q  185 attttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||||||||||||||    
T  34637943 attttgtgagattgtttgggagaacttatgaaa 34637975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 44060995 - 44061031
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaa 216  Q
    |||||||||||||||  ||||||||||||||||||||    
T  44060995 cataaattttgtgagggtgtttgggagaacttatgaa 44061031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 2295249 - 2295176
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||| ||||||||||||||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  2295249 cctgtttgaattggcttatttgagct-tatctactggcataagttttgtgagactgtttgggagaacttatgaaa 2295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 1432664 - 1432595
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||| | |||| || | |||||||||||||||||||||||| |||||||||||||    
T  1432664 tttggattggcttatttgagct-tatccaccgacataaattttgtgagactgtttggaagaacttatgaaa 1432595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 38001757 - 38001675
Alignment:
Q  134 aattaagaacctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||  |||| ||||||  ||||||||||||| |||| || | ||||| ||||||||||||||||||||||||||||||||    
T  38001757 aattaagggcctgcttggataagcttatttgagtt-tatcaactgacataagttttgtgagactgtttgggagaacttatgaaa 38001675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 3233933 - 3234005
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| |||||||||| | ||||||  ||| ||| ||||||||||||||| ||||||||||||||||    
T  3233933 ctgtttggattgacttatttgagct-tatctagtgccgtaagttttgtgagactgttagggagaacttatgaaa 3234005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 34795363 - 34795436
Alignment:
Q  143 cctgtttggattggcttatttgagttctatc-tacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| |||||||||  ||| | ||| | ||||||||||| ||||||||||||||||||||||||||    
T  34795363 cctgtttggattgggttatttgag--ctagcctactggcataaattttgcgagactgtttgggagaacttatgaaa 34795436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 36514607 - 36514666
Alignment:
Q  157 cttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| ||||||| ||||||| |||| |||||||||| ||||||||||||||||    
T  36514607 cttatttgagtt-tatctactgccataagttttttgagactgttagggagaacttatgaaa 36514666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 37617384 - 37617455
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||||| ||||||  ||| ||| ||||||||||||||||| ||||| ||||||||    
T  37617384 tgtttggattgacttatttgagtt-tatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaa 37617455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 50644174 - 50644245
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||| | |||||||   ||||  ||||||||||||||||||||||||||||||||    
T  50644174 tgtttggattgacttatttgagct-tatctactaacatatgttttgtgagactgtttgggagaacttatgaaa 50644245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 33204312 - 33204382
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    |||||| ||| | |||||||||| | ||||||| | ||||| ||||||||||||||||||||||||||||||    
T  33204312 ctgtttagatcgacttatttgagct-tatctactgacataagttttgtgagactgtttgggagaacttatga 33204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 6102297 - 6102240
Alignment:
Q  152 attggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaact 210  Q
    |||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||    
T  6102297 attgacttatttgagtt-tatctaccggcataaattttgtgagattgtttgggagaact 6102240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 14576571 - 14576644
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | ||||||| | | |||||||||||  ||||||||||| ||||| |||||    
T  14576571 cctgtttggattggcttatttgagct-tatctactggcttaaattttgtggcactgtttgggacaacttgtgaaa 14576644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 38247480 - 38247407
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| ||||||||  | ||||||| | ||||| |||||||  |||||||||||||||||||||||    
T  38247480 cctgtttggattgggttatttgaact-tatctactggcataagttttgtgtcactgtttgggagaacttatgaaa 38247407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 14385710 - 14385781
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    |||||| ||||||||||||||||| | ||||||| | ||||| ||| |||||||| ||| |||||||||||||    
T  14385710 cctgttcggattggcttatttgagct-tatctactggcataagtttcgtgagactattttggagaacttatga 14385781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 5721079 - 5721005
Alignment:
Q  142 acctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||| |||||||||||||||||||| | || ||||   ||||| ||||||  ||||||||||||||||||||||||    
T  5721079 acctctttggattggcttatttgagct-taactacttgcataagttttgttggactgtttgggagaacttatgaaa 5721005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 38018307 - 38018358
Alignment:
Q  170 tatctacagccataaattttgtgagactgtttgggagaacttatgaaagcag 221  Q
    ||||||| | ||||| ||||||||||||| |||||| |||||||||||||||    
T  38018307 tatctactggcataagttttgtgagactggttgggaaaacttatgaaagcag 38018358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 39976130 - 39976200
Alignment:
Q  146 gtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||| || |||||||||| | ||||||| | ||||| |||||||| |||||||| ||||||||||||||    
T  39976130 gtttggactgacttatttgagat-tatctactgacataagttttgtgaaactgtttgagagaacttatgaaa 39976200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 473316 - 473243
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||| ||||||||||||||||  |||||||| | ||||| || ||||| ||  |||||||||||||||||||    
T  473316 cctgtttagattggcttatttgagc-ctatctactggcataagttctgtgaaacattttgggagaacttatgaaa 473243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 2778040 - 2777971
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||| || | ||||||    ||||| |||||||||||||||| |||||||||||||||    
T  2778040 tttggattggcttattttagct-tatctatttgcataagttttgtgagactgtttaggagaacttatgaaa 2777971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 9572061 - 9572091
Alignment:
Q  187 tttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||||||||||    
T  9572061 tttgtgagactgtttgggagaacttatgaaa 9572091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 2295344 - 2295280
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaa 208  Q
    |||||||||||||||||||||||| | ||||||| | | ||| |||| ||||||| ||||||||||    
T  2295344 cctgtttggattggcttatttgagct-tatctactgacttaagttttctgagactatttgggagaa 2295280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 4445816 - 4445783
Alignment:
Q  188 ttgtgagactgtttgggagaacttatgaaagcag 221  Q
    ||||||||||||||||||||| ||||||||||||    
T  4445816 ttgtgagactgtttgggagaatttatgaaagcag 4445783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 49938864 - 49938827
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  49938864 cataagttttgtgagattgtttgggagaacttatgaaa 49938827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 48536653 - 48536681
Alignment:
Q  189 tgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||||||||    
T  48536653 tgtgagactgtttgggagaacttatgaaa 48536681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 55437230 - 55437156
Alignment:
Q  142 acctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||||||| | ||||||  |||||||||||||    
T  55437230 acctgtttggattggcttatttgagtt-tatctactgccataagttttgtgaaattgtttgaaagaacttatgaaa 55437156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 54426196 - 54426123
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | ||||||| | ||||| ||||||||||||| ||||||||||||| ||||    
T  54426196 cctgtttggattggcttatttgagct-tatctactggcataagttttgtgagactgcttgggagaacttaggaaa 54426123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 21731573 - 21731646
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| |||||||||   ||||||| | ||||| |||||||||| |||||||||||||||||||||    
T  21731573 cctgtttggattggtttatttgagca-tatctactgacataagttttgtgagattgtttgggagaacttatgaaa 21731646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 7367972 - 7368045
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaatt-ttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| |||||||||||| ||||||||| ||||||   |||||||||||||||||||| || ||||||    
T  7367972 ctgtttggattgacttatttgagtt-tatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaa 7368045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 8705093 - 8705016
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    ||||||||||||||| ||||||| | ||||||  | ||||| ||||||||||||| |||||||||||||| ||| ||||    
T  8705093 ctgtttggattggctcatttgagct-tatctattgacataagttttgtgagactgattgggagaacttataaaaacagt 8705016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 24169414 - 24169349
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    |||||||||||||||||| ||||| ||||||| | ||||| |||||||||||| |||| ||||||||    
T  24169414 tgtttggattggcttattagagtt-tatctactggcataagttttgtgagactatttgagagaactt 24169349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 25904176 - 25904213
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||||||| |||||||||    
T  25904176 cataaattttgtgagactgtttgggagagcttatgaaa 25904213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 39603090 - 39603160
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||  || ||||  |  |||| ||||||||||||||||||||||||||| ||||    
T  39603090 tgtttggattggcttatttgag--ctttctattggtataagttttgtgagactgtttgggagaacttaggaaa 39603160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 15173223 - 15173293
Alignment:
Q  146 gtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||| |||||||||  | ||||||| | ||||| ||||||||||||||||||||||  ||||||||    
T  15173223 gtttggattgacttatttgaact-tatctactgacataagttttgtgagactgtttgggagactttatgaaa 15173293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 18815176 - 18815110
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaact 210  Q
    |||||||||||||||||||||||| | || ||||   ||||| ||||||||||||||||| |||||||    
T  18815176 cctgtttggattggcttatttgagct-tacctactagcataagttttgtgagactgtttgagagaact 18815110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 22471382 - 22471343
Alignment:
Q  188 ttgtgagactgtttgggagaacttatgaaagcagtgatga 227  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  22471382 ttgtgagactgtttgggagaacttatgaaaacagttatga 22471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 23320004 - 23319933
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | |||||||   |||| ||||  |||||||||||||||||| ||||||||    
T  23320004 cctgtttggattggcttatttgagat-tatctactagcatacattt--tgagactgtttgggagaagttatgaaa 23319933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 25571412 - 25571342
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatg 214  Q
    |||||||||||||||||||||||||| ||||||| | ||||| ||   ||| ||||||| ||||||||||||    
T  25571412 cctgtttggattggcttatttgagtt-tatctactgacataagttacatgaaactgtttaggagaacttatg 25571342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 40174695 - 40174637
Alignment:
Q  158 ttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||   ||||| |||||||||||||||||||| |||||||||||    
T  40174695 ttatttgagtt-tatctactaacataagttttgtgagactgtttgggataacttatgaaa 40174637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 21043155 - 21043216
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggaga 207  Q
    ||||||||||| |||||||||||| || |||||| ||| ||  ||||||||||||||||||||    
T  21043155 tgtttggattgacttatttgagtt-tacctacaggcatgaaacttgtgagactgtttgggaga 21043216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 27043748 - 27043817
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatg 214  Q
    |||||||||||| |||||||||| | ||||||| | ||||| |||||||| ||||||||| |||| |||||    
T  27043748 ctgtttggattgacttatttgagct-tatctactgacataagttttgtgaaactgtttggaagaagttatg 27043817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 44798033 - 44797972
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttggga 205  Q
    |||||||||||||||| |||| || | ||||||| | ||||| ||||||||||||||||||||    
T  44798033 cctgtttggattggctgatttaagct-tatctactgacataagttttgtgagactgtttggga 44797972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 52315118 - 52315183
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    ||||||||| |||||||||||| ||||||| | | ||| |||||||||| ||||||| |||||||||    
T  52315118 tttggattgacttatttgagtt-tatctactgacgtaagttttgtgagattgtttggaagaacttat 52315183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 29913068 - 29913027
Alignment:
Q  176 cagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||| ||||| || |||||||||||||||||||||||    
T  29913068 cagccataagttttgcgaaactgtttgggagaacttatgaaa 29913027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 49940120 - 49940157
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  49940120 cataagttttgtgagactgtttgagagaacttatgaaa 49940157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 11264453 - 11264390
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaa-ttttgtgagactgtttgggaga 207  Q
    ||||||||||||||||||||||| |||||||||   ||||||  | |||||||||||||||||||    
T  11264453 ctgtttggattggcttatttgag-tctatctactagcataaacatctgtgagactgtttgggaga 11264390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 50681048 - 50681084
Alignment:
Q  186 ttttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  50681048 ttttgtgagactgtttgagagaacttatgaaaacagt 50681084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 30251371 - 30251444
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | ||||||| | ||||| ||| ||||||||||||||||||||||| ||||    
T  30251371 cctgtttggattggcttatttgagct-tatctactgacataagtttcgtgagactgtttgggagaacttacgaaa 30251444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 36963272 - 36963339
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactta 212  Q
    ||||||||||||||||||||||| |  |||||| | ||||| |||||||||||||||||||||||||||    
T  36963272 ctgtttggattggcttatttgagcta-atctactggcataagttttgtgagactgtttgggagaactta 36963339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 35643905 - 35643978
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||| ||||||||||||||| | | ||||||| | ||||| |||||||||||||||||||| |||||||||||    
T  35643905 cctgttgggattggcttatttgggct-tatctactggcataatttttgtgagactgtttgggataacttatgaaa 35643978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 38602480 - 38602411
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    ||||||||||||| |||||||||| | ||||||| | ||||| ||||||||| ||||||||||||||||||    
T  38602480 cctgtttggattgacttatttgagct-tatctactgacataagttttgtgaggctgtttgggagaacttat 38602411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 38648504 - 38648431
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||| |||||||||||||| || | ||||||| | ||||| |||||||||||||||||||||| |||||||||    
T  38648504 cctgttaggattggcttatttaagat-tatctactgacataagttttgtgagactgtttgggagaccttatgaaa 38648431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 43717855 - 43717924
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||| | ||||||  | ||||| |||||||||||| |||||||||||||||||||    
T  43717855 tttggattggcttatttgagct-tatctattgacataagttttgtgagactatttgggagaacttatgaaa 43717924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 2487927 - 2487999
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaatt-ttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||| |||||| | |||||    ||||||||||||||||||||||||||||||    
T  2487927 tgtttggattggcttatttgagttc-atctactgacataagcacttgtgagactgtttgggagaacttatgaaa 2487999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 15180693 - 15180633
Alignment:
Q  142 acctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgg 203  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||| |||||    
T  15180693 acctgtttggattggcttatttgagtt-tatctactgccataagttttatgagactttttgg 15180633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 26771392 - 26771345
Alignment:
Q  170 tatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  26771392 tatctacgggcataagttttgtgagactgtttgggagaacttatgaaa 26771345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 44792807 - 44792741
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactta 212  Q
    |||||||||||||||||||||| | ||||||| |  ||||||| ||||||||||||| ||||||||||    
T  44792807 tgtttggattggcttatttgagct-tatctactgggataaattatgtgagactgttttggagaactta 44792741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 28763485 - 28763448
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  28763485 cataagttttgtgagactgtttgggagaacttatgaaa 28763448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 1058005 - 1058067
Alignment:
Q  154 tggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||| | |||||||   ||||| |||||||||||||||||||||||||| |||||    
T  1058005 tggcttatttgagct-tatctacttacataagttttgtgagactgtttgggagaacttttgaaa 1058067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 6525964 - 6525899
Alignment:
Q  149 tggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    ||||||| |||||||||||| |||||||   ||||| ||||||| |||||||||||| |||||||||    
T  6525964 tggattgtcttatttgagtt-tatctactaacataagttttgtgtgactgtttgggaaaacttatga 6525899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 9130238 - 9130307
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    |||||||||| ||||||||||| | ||||||| | ||||| |||||||||||| ||||||| | |||||||    
T  9130238 tgtttggattagcttatttgagct-tatctactggcataagttttgtgagactatttgggacaccttatga 9130307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 27754520 - 27754478
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||    
T  27754520 cataagttttgtgagactatttgggagaacttatgaaaacagt 27754478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 30151215 - 30151177
Alignment:
Q  179 ccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  30151215 ccataagttttgtgagactgttagggagaacttatgaaa 30151177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 43045642 - 43045715
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||| || | |||||||   |||||  ||||||||||||||| ||||| |||||||||    
T  43045642 cctgtttggattggcttatttaagct-tatctactagcataagatttgtgagactgttttggagatcttatgaaa 43045715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 6882044 - 6882007
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  6882044 cataagttttgtgagactgtttgggagaacctatgaaa 6882007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 42893408 - 42893476
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    |||||||||||  |||||||||||| ||||||| | ||||| |||||||  | |||||||||||||||||    
T  42893408 ctgtttggattaacttatttgagtt-tatctaccggcataatttttgtgctagtgtttgggagaacttat 42893476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 1096641 - 1096570
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||||| ||| ||  | ||||| |||||||||| | ||||||||||| |||||||    
T  1096641 tgtttggattgacttatttgagtt-tatttagtgacataagttttgtgagattttttgggagaacatatgaaa 1096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 30657696 - 30657751
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgttt 201  Q
    ||||||||| | |||||||||||| ||||||  | ||||||||||||||||||||||    
T  30657696 tgtttggatcgacttatttgagtt-tatctaatgacataaattttgtgagactgttt 30657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 10640106 - 10640033
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| ||||||||||||| ||||||| | ||||| |||||||| | |||||||||||||||||||||    
T  10640106 cctgtttggattagcttatttgagtt-tatctactgacataagttttgtgatattgtttgggagaacttatgaaa 10640033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 16937799 - 16937873
Alignment:
Q  142 acctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||| | |||||||   ||||| |||||||||| ||||||| |||||||||||||    
T  16937799 acctgtttggattggcttatttgagct-tatctactagcataagttttgtgagagtgtttggaagaacttatgaaa 16937873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 32941622 - 32941549
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| |||||| ||| | ||||||| | ||||| || |||||||| ||||||||||||||||||||    
T  32941622 ctgtttggattgacttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaa 32941549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 15015986 - 15015923
Alignment:
Q  153 ttggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| | ||||||| | |||||  |||||||||||||||||||||||||||||||    
T  15015986 ttggcttatttgagct-tatctactgacataagctttgtgagactgtttgggagaacttatgaaa 15015923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 9107240 - 9107170
Alignment:
Q  146 gtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||| |||||||||||| ||||||  | ||||| |||||||||| |||||||||||||| ||||||    
T  9107240 gtttggattgacttatttgagtt-tatctagtgacataagttttgtgagaatgtttgggagaactcatgaaa 9107170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 1773024 - 1773094
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||| || | |||||||  |||||| |||||||||||||  |||||||||||||||||    
T  1773024 ctgtttggattggcttattttagct-tatctacttccataagttttgtgagactg--tgggagaacttatgaaa 1773094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 15246986 - 15246910
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagca 220  Q
    |||||||||||| | ||||||||| | ||||||| | ||||| |||| | ||| ||||||||||||||||||||||||    
T  15246986 cctgtttggatttgtttatttgagct-tatctactgacataagttttattagaatgtttgggagaacttatgaaagca 15246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 12425712 - 12425657
Alignment:
Q  157 cttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    |||||||||| | ||||||| | ||||| ||||||||||||||||||||||||||||    
T  12425712 cttatttgagct-tatctactgtcataagttttgtgagactgtttgggagaacttat 12425657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 39594958 - 39594887
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||| | ||||||| | ||||| |||||| ||| ||||||||| |||||||||||    
T  39594958 tgtttggattgacttatttgagct-tatctaccgacataagttttgttagattgtttgggacaacttatgaaa 39594887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 41419470 - 41419399
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||| |  |||||| | |||||||||||||||| ||||||||| ||||| |||||    
T  41419470 tgtttggattgacttatttgagcta-atctactgacataaattttgtgagattgtttgggataacttgtgaaa 41419399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 41534589 - 41534518
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||| |  |||||| | |||||||||||||||| ||||||||| ||||| |||||    
T  41534589 tgtttggattgacttatttgagcta-atctactgacataaattttgtgagattgtttgggataacttgtgaaa 41534518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 7674804 - 7674730
Alignment:
Q  139 agaacctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatg 214  Q
    ||||||| |||||||||||||||||||| | |||||||   | ||| ||||||||||||| |||| ||||||||||    
T  7674804 agaacctatttggattggcttatttgagct-tatctacctacttaagttttgtgagactgcttggaagaacttatg 7674730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 16457938 - 16457969
Alignment:
Q  186 ttttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||||||||||    
T  16457938 ttttgtgagactgtttgggagaacttatgaaa 16457969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 41981662 - 41981693
Alignment:
Q  186 ttttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||||||||||    
T  41981662 ttttgtgagactgtttgggagaacttatgaaa 41981693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 32010098 - 32010025
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||| |||||||||||| |||||||   ||||| |||  | |||||||||| ||||||||||||||    
T  32010098 cctgtttggattgacttatttgagtt-tatctactcacataagtttcttcagactgtttgagagaacttatgaaa 32010025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 42100464 - 42100391
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||||| | ||||||  | ||||||||||||| |||||| || |||||||| |||||    
T  42100464 cctgtttggatgggcttatttgagct-tatctattggcataaattttgtgtgactgtgtgagagaacttgtgaaa 42100391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 3520721 - 3520657
Alignment:
Q  152 attggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||| || ||||||    |||| || |||||||||||||||||||||||||||||    
T  3520721 attggcttatttgagctc-atctactagtataagttgtgtgagactgtttgggagaacttatgaaa 3520657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 11064814 - 11064746
Alignment:
Q  148 ttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||  ||||||||||| |||||||   ||||| |||||||||| |||||| ||||||||||||||    
T  11064814 ttggattgatttatttgagtt-tatctaccaacataagttttgtgagattgtttgagagaacttatgaaa 11064746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 19460243 - 19460315
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaa 216  Q
    ||||||| | |||||| ||||||||| ||||||| | ||||| ||| |||||| ||||||||||||||| ||||    
T  19460243 cctgtttaggttggctcatttgagtt-tatctactggcataagtttagtgagattgtttgggagaacttttgaa 19460315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 39248215 - 39248182
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttat 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  39248215 cataagttttgtgagactgtttgggagaacttat 39248182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 2142806 - 2142734
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||| ||| |||||||||||| ||||||||  ||||| |||| |||||||||||||||||||||||||||    
T  2142806 ctgtttggtttgacttatttgagtt-tatctacatgcataagttttatgagactgtttgggagaacttatgaaa 2142734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 30331902 - 30331831
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| ||||||| || | ||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  30331902 tgtttggattgacttatttcagct-tatctactgacataagttttgtgagactgtttgggagaacttatgaaa 30331831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 27317532 - 27317459
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||| |||||||||| | ||||||| | ||||| |||| |||||||||||| ||||||||||||||    
T  27317532 cctgtttggattgacttatttgagct-tatctaccgacataagttttatgagactgtttgagagaacttatgaaa 27317459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 44590173 - 44590104
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||| |||||| || ||||| ||||||||||| |||||  |||||||||||||    
T  44590173 tttggattggcttatttgagtt-tatctatagacataagttttgtgagaccgtttgaaagaacttatgaaa 44590104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 26143559 - 26143630
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||| |||||| | ||||||| | |||||||||||  |||||||||||||||||||| ||||    
T  26143559 cctgtttggattggcttgtttgagct-tatctactgacataaattttg--agactgtttgggagaacttacgaaa 26143630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 42659127 - 42659201
Alignment:
Q  142 acctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||| |||||||||||||| | ||| ||| | ||||| ||||||||||||||||||||||| || |||||    
T  42659127 acctgtttgggttggcttatttgagct-tatttactggcataagttttgtgagactgtttgggagaagttttgaaa 42659201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 4607078 - 4607005
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | |||||||    |||| |||||||||||| ||||||||||||| |||||    
T  4607078 cctgtttggattggcttatttgagct-tatctaccaatataagttttgtgagactatttgggagaacttgtgaaa 4607005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 31744451 - 31744378
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||| | | ||||||| | ||||| |||| |||||||||||| |||||||| |||||    
T  31744451 cctgtttggattggcttatttgggct-tatctaccgacataagttttctgagactgtttgagagaacttttgaaa 31744378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 39073621 - 39073690
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    ||||| |||||  |||||||||||| |||||| | ||||| |||||||||||||||||| |||||||||||    
T  39073621 tgtttagattgatttatttgagttc-atctaccgacataatttttgtgagactgtttggaagaacttatga 39073690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 42419942 - 42419873
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||| |||||||||||| ||||| | | ||||| |||| |||||||||||||||||||||| ||||    
T  42419942 tttggattgacttatttgagtt-tatcttctgacataagttttttgagactgtttgggagaacttacgaaa 42419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 15305827 - 15305760
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    |||||||||||||||||||||||| | ||||||  | ||||| |||||||| ||||||||| |||||||    
T  15305827 cctgtttggattggcttatttgagct-tatctattgacataagttttgtgaaactgtttggtagaactt 15305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 41812011 - 41812082
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||| | ||||| ||| || || ||| ||||| |||||||||||||||| |||||    
T  41812011 tgtttggattggcttatttgagct-tatctgcagtcaaaagtttagtgaggctgtttgggagaacttttgaaa 41812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 3312228 - 3312166
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaa 208  Q
    |||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| |||||||    
T  3312228 tgtttggattggcttatttgagct-tatctactgacgtaagttttgtgagactgttggggagaa 3312166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 24101045 - 24101011
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatg 214  Q
    ||||| |||||||||||||||||||||||||||||    
T  24101045 cataagttttgtgagactgtttgggagaacttatg 24101011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 40682312 - 40682379
Alignment:
Q  146 gtttggattggcttatttgagtt---ctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    |||||||||||||||||||||||   ||| |||| | ||||| |||||||||| |||||||||||||||    
T  40682312 gtttggattggcttatttgagtttgtcta-ctactgacataagttttgtgagattgtttgggagaactt 40682379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 13867041 - 13866957
Alignment:
Q  133 taattaagaacctgtttggattggcttatttgagttctatctacagccataaatt-ttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||  ||||||||||| | |||||||| | ||||||| ||||||||   ||||||||||||||| ||||||||| ||||    
T  13867041 taattaagaatatgtttggattgacctatttgagct-tatctactgccataaacacttgtgagactgtttgagagaacttaagaaa 13866957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 32837431 - 32837402
Alignment:
Q  188 ttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||||||||||    
T  32837431 ttgtgagactgtttgggagaacttatgaaa 32837402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 36534885 - 36534848
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  36534885 cataagttttgtgagactgtttgggataacttatgaaa 36534848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 15757577 - 15757648
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||| ||| ||||||||| | ||| ||| | ||||| ||||||||||||| ||||||||| ||||||||    
T  15757577 tgtttggaatggtttatttgagct-tatttactggcataagttttgtgagactgcttgggagaatttatgaaa 15757648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 42868398 - 42868469
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    ||||||||||||| |||||||||| | ||||||  | ||||  ||| |||| |||||||||||||||||||||    
T  42868398 cctgtttggattgccttatttgagct-tatctattggcatacgtttcgtgacactgtttgggagaacttatga 42868469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 48470197 - 48470124
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||| ||||||||||||||||| | |||||| || ||||| |||| ||||| |||||||||||||||||||||    
T  48470197 cctgttaggattggcttatttgagct-tatctatagacataagttttatgagattgtttgggagaacttatgaaa 48470124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 20526597 - 20526521
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    ||||||||||| |||||||||||| ||||||  |  | |||||||||||||||||||| |||||||||||||| ||||    
T  20526597 tgtttggattgacttatttgagtt-tatctattggtagaaattttgtgagactgtttgagagaacttatgaaaacagt 20526521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 45593682 - 45593612
Alignment:
Q  143 cctgtttggattggcttatttgagttc-tatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    ||||||||||||||||||||||||||  ||| ||| | |||||  |||||||||||||||||||||||||||    
T  45593682 cctgtttggattggcttatttgagtttatat-tactgacataagctttgtgagactgtttgggagaacttat 45593612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 4970709 - 4970782
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||| |||||||||| | |||||   | ||||| | ||||||||||||||||||||||||||||||    
T  4970709 cctgtttggattgacttatttgagct-tatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaa 4970782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 19302476 - 19302553
Alignment:
Q  139 agaacctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||| |||| |||||||||| | ||||||| | ||||| |||||||||| | |||||||||| ||||||||    
T  19302476 agaacctgtttgaattgacttatttgagct-tatctactgacataagttttgtgagaatatttgggagaatttatgaaa 19302553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 22283565 - 22283630
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    ||||||||||| |||||||||  | ||||||| | |||||||||||||||||||||| |||||||||    
T  22283565 tgtttggattgacttatttgaact-tatctactgtcataaattttgtgagactgtttaggagaactt 22283630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 45338602 - 45338537
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    |||||||||||||||||||||| |||| ||   ||||| |||| |||||||||||||||||||||||    
T  45338602 tttggattggcttatttgagtt-tatccactagcataagttttttgagactgtttgggagaacttat 45338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 21568448 - 21568485
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||| |||||||||||||||||||||||||||||||||    
T  21568448 catatattttgtgagactgtttgggagaacttatgaaa 21568485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 18765433 - 18765366
Alignment:
Q  147 tttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatga 215  Q
    |||||||||  ||||||||| | ||||||  | ||||| ||||||||||||||||||||||||||||||    
T  18765433 tttggattgctttatttgagct-tatctattgacataagttttgtgagactgtttgggagaacttatga 18765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 19214349 - 19214396
Alignment:
Q  170 tatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||  ||||| |||||||||| |||||||||||||||||||||    
T  19214349 tatctacatgcataagttttgtgagattgtttgggagaacttatgaaa 19214396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 420470 - 420440
Alignment:
Q  187 tttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||||||||||    
T  420470 tttgtgagactgtttgggagaacttatgaaa 420440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 5947394 - 5947321
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||||| | ||||||  |  |||| |||| ||||||||||||| ||||||| |||||    
T  5947394 cctgtttggattggcttatttgagct-tatctattggtataagttttatgagactgtttggaagaacttttgaaa 5947321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 20526882 - 20526919
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  20526882 cataaattttgtgagactgtttgagagaactgatgaaa 20526919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 44989630 - 44989667
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  44989630 cataagttttgtgagactgtttgggaaaacttatgaaa 44989667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 46280210 - 46280266
Alignment:
Q  156 gcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    ||||||||||||| ||||| | | ||||  ||||||||||||||||||||||||||||    
T  46280210 gcttatttgagtt-tatctgctgacatatgttttgtgagactgtttgggagaacttat 46280266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 46407385 - 46407313
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| ||||||||||| ||||| | ||||||| ||||||| ||||| || |||  ||||||||||||||||||    
T  46407385 ctgttaggattggcttaattgagct-tatctactgccataagttttgggaaactacttgggagaacttatgaaa 46407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 33266405 - 33266476
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||||| |||||||||| | ||||||| | ||||| |||||||| ||| |||||||||| ||| ||||    
T  33266405 tgtttggattgacttatttgagct-tatctaccgacataagttttgtgaaactatttgggagaatttacgaaa 33266476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 39907954 - 39907887
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaactt 211  Q
    |||||||||||||| | ||||||| | ||| |||||  |||| ||||||||||||||||| ||||||||    
T  39907954 cctgtttggattggttcatttgagct-tatatacagggataagttttgtgagactgtttgagagaactt 39907887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 10645304 - 10645375
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||| ||||||| | ||||||  | ||||| |||||| |||||||||||||||||||||||||    
T  10645304 tgtttggattggctaatttgaggt-tatctaatgacataagttttgtaagactgtttgggagaacttatgaaa 10645375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 848141 - 848073
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttat 213  Q
    ||||||||||||| |||||||||| | |||||| ||| |||| |||||||||||||||||| |||||||||    
T  848141 cctgtttggattgccttatttgagct-tatctatagc-ataagttttgtgagactgtttggaagaacttat 848073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 30641898 - 30641820
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaagcagt 222  Q
    |||||||| ||||||||||||||||| |||||| |  |||  ||||||||||| ||| || |||||||||||||| ||||    
T  30641898 cctgtttgaattggcttatttgagtt-tatctatatgcatgcattttgtgagattgtgtgagagaacttatgaaaacagt 30641820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 30926672 - 30926599
Alignment:
Q  143 cctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||||||| |||||||||||||| | ||| | | | |||||||||  ||||||||||||| |||||||||||||    
T  30926672 cctgtttggtttggcttatttgagct-tattttctggcataaatttgatgagactgtttggaagaacttatgaaa 30926599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 2455105 - 2455068
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2455105 cataagttttgtgagactgtttgggagaacttctgaaa 2455068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 31813278 - 31813241
Alignment:
Q  180 cataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  31813278 cataagttttgtgagactatttgggagaacttatgaaa 31813241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 34404644 - 34404716
Alignment:
Q  144 ctgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||  |||||||||||| |||| || | ||||| ||||||| || | |||||||||||||||||||    
T  34404644 ctgtttggatttacttatttgagtt-tatcaactgacataagttttgtgtgagtctttgggagaacttatgaaa 34404716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 4163304 - 4163233
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||| | ||||||| | ||||| ||||  ||||||||| | |||||| |||||||    
T  4163304 tgtttggattggcttatttgagct-tatctactggcataagttttacgagactgttcgtgagaacctatgaaa 4163233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 4224925 - 4224854
Alignment:
Q  145 tgtttggattggcttatttgagttctatctacagccataaattttgtgagactgtttgggagaacttatgaaa 217  Q
    |||||||||||||||||||||| | ||||||| | ||||| ||||  ||||||||| | |||||| |||||||    
T  4224925 tgtttggattggcttatttgagct-tatctactggcataagttttacgagactgttcgtgagaacctatgaaa 4224854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 44144 - 44115
Alignment:
Q  186 ttttgtgagactgtttgggagaacttatga 215  Q
    ||||||||||||||||||||||||||||||    
T  44144 ttttgtgagactgtttgggagaacttatga 44115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University