View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20988_high_6 (Length: 354)
Name: NF20988_high_6
Description: NF20988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20988_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 354
Target Start/End: Complemental strand, 44958896 - 44958546
Alignment:
| Q |
4 |
ggtagattattctctttaaacatgcatcttgccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatc |
103 |
Q |
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| T |
44958896 |
ggtagcttattctctttaaacatgcatctttccatgttcataatggtcttttcctcctcttcatcaaacattatgtatagatgtgaatggtgaagtgatc |
44958797 |
T |
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| Q |
104 |
tcatgttgaattcccatctcatcaaagaaattctccaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttcttt |
203 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958796 |
tcatgttgaattcccatctcatcaaaaaaattctctaactatttagatgtatattctcatccttcatcacttctaagcatatttacctgtctgcttcttt |
44958697 |
T |
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| Q |
204 |
ttcaactaatactttgaacttattgaagacatgaaacacttcatctttagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44958696 |
ttcaactaatactttgaacttattgaagacatgaaacacttcatctctagtcttgattaggtaaacctacgtaattgtactgtattcacccataaatgag |
44958597 |
T |
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| Q |
304 |
acaatgtacctattccctcgcaatgaaaatgtatcaaatggtccactaaca |
354 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44958596 |
acaatgtacctattccctcacaatgaaaatgtatcaaatggtccactaaca |
44958546 |
T |
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