View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20988_low_3 (Length: 476)
Name: NF20988_low_3
Description: NF20988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20988_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 31612405 - 31612860
Alignment:
| Q |
18 |
aatttggacatagacttgaaaacttggcttgtagcttgtgttagatatggtctaatgaagatcatattatacattaaacaaccaataaaaccggcataag |
117 |
Q |
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|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
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| T |
31612405 |
aatttggacatagacttgaaaacttgacttataacttgtgttagatatggtctaatgaaaatcatatcatacattaaacaaccaataaaaccagcataag |
31612504 |
T |
|
| Q |
118 |
aaacctttgacatatgctcagcttctgcatttatctttgaaaactgatccaatcgtacactgaaatgagttgttttatcttagagatattttggttgata |
217 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31612505 |
aaacctttgacatatgctcagcttctgcatttgtcattgaagactgatccaatcgtacactgaaatgagttgttttattttagagatattttggttgata |
31612604 |
T |
|
| Q |
218 |
gtctggtttgtataactttttagacaggaccgtgaaatgtagaggcaacttgttgtgaagccgataatcattttggtgattttgtaattcataaaccaaa |
317 |
Q |
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||||| ||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31612605 |
gtctgatttgtataattttttaggcaataccgtgaaatgtagaggcaacttgtcgtgaagccgataatcatttttgtgattttgtaattcataaaccaaa |
31612704 |
T |
|
| Q |
318 |
attaaaaaactagaaccatgtaatattaactatcatccattctcatttcagtgtaagaatgccaaaacaatatccattaatttcatgagaaaattaatta |
417 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612705 |
attaaaaaactagaagcatgtaatattaactatcatccattctcatttcaatgtaagaatgccaaaacaatatccattaatttcatgagaaaattaatta |
31612804 |
T |
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| Q |
418 |
aaacaactcctaattaatgtgcttaaacaatgccctaagaactcttattaccattt |
473 |
Q |
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| T |
31612805 |
aaacaaatcctaattaatgtgcttaaataatgccctgagaactcttattaccattt |
31612860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 31611384 - 31611535
Alignment:
| Q |
19 |
atttggacatagacttgaaaacttggcttgtagcttgtgttagatatggtctaatgaagatcatattatacattaaacaaccaataaaaccggcataaga |
118 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||| | | || ||||||||||||||||||||||| |||||||| |
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| T |
31611384 |
atttggacataaacttgaaaacttaacttatagcttgtgctagatatggtctaatgaatactacatcatacattaaacaaccaataaaactggcataagg |
31611483 |
T |
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| Q |
119 |
aacctttgacatatgctcagcttctgcatttatctttgaaaactgatccaat |
170 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
31611484 |
aacctttgacatatgctctacttctgcatttgtctttgaaaactaatccaat |
31611535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 31607125 - 31607228
Alignment:
| Q |
296 |
attttgtaattcataaaccaaaattaaaaaactagaaccatgtaatattaactatcatccattctcatttcagtgtaagaatgccaaaacaatatccatt |
395 |
Q |
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||||| |||||||||||||||||| ||| |||||| | |||||||||||||||||||||| |||| |||||| ||||| ||||||||||| ||||||||| |
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| T |
31607125 |
attttctaattcataaaccaaaataaaacaactagtagcatgtaatattaactatcatccgttcttatttcaatgtaaaaatgccaaaaccatatccatt |
31607224 |
T |
|
| Q |
396 |
aatt |
399 |
Q |
| |
|
|||| |
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|
| T |
31607225 |
aatt |
31607228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 31623614 - 31623693
Alignment:
| Q |
371 |
taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg |
449 |
Q |
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||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31623614 |
taagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaactcctaattaatgtgcattaaacaatg |
31623693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 31605021 - 31605099
Alignment:
| Q |
371 |
taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg |
449 |
Q |
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| T |
31605021 |
taagaatcccaaaacaacgtccattaatttcatgagaaaattaattaaaacaact-ctaattaatgtgctttaaacaatg |
31605099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 31607302 - 31607379
Alignment:
| Q |
371 |
taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg |
449 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || || | ||||||||| ||||| ||||||||||||| |||||||||| |
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| T |
31607302 |
taagaacgccaaaacaatatccactaatttaat--gacatttaattaaatcaacttctaattaatgtgctttaaacaatg |
31607379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 31606982 - 31607017
Alignment:
| Q |
168 |
aatcgtacactgaaatgagttgttttatcttagaga |
203 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
31606982 |
aatcgtacactgaaatgggttgttttatcttagaga |
31607017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 33559620 - 33559704
Alignment:
| Q |
86 |
atacattaaacaaccaataaaaccggcataagaaacctttgacatatgctcagcttctgcatttatctttgaaaactgatccaat |
170 |
Q |
| |
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|||||| ||||||||||||| || | |||||| |||||||||||||| || | ||||||||| |||||||| | ||| ||||||| |
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| T |
33559620 |
atacatcaaacaaccaataacactgacataaggaacctttgacatatacttaacttctgcatctatctttggacactaatccaat |
33559704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 9837903 - 9837799
Alignment:
| Q |
52 |
cttgtgttagatatggtctaatgaagatcatattatacattaaacaaccaataaaaccggcataagaaacc-tttgacatatgctcagcttctgcattta |
150 |
Q |
| |
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||||||| | |||||||||| || ||| |||| ||||||||||||| ||| ||||| ||||||| |||| ||| |||||| |||| ||||| ||||| |
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| T |
9837903 |
cttgtgtcaaatatggtctagtgtagaccataacatacattaaacaagcaacaaaactagcataaggaaccttttaacatatactcaacttctacatttg |
9837804 |
T |
|
| Q |
151 |
tcttt |
155 |
Q |
| |
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||||| |
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|
| T |
9837803 |
tcttt |
9837799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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