View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20988_low_5 (Length: 373)

Name: NF20988_low_5
Description: NF20988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20988_low_5
NF20988_low_5
[»] chr3 (2 HSPs)
chr3 (32-373)||(34897598-34897940)
chr3 (1-54)||(1995520-1995573)
[»] chr6 (3 HSPs)
chr6 (2-44)||(9952993-9953035)
chr6 (1-45)||(2800566-2800610)
chr6 (1-45)||(7215807-7215851)
[»] chr1 (3 HSPs)
chr1 (1-43)||(35534741-35534783)
chr1 (9-46)||(32887735-32887772)
chr1 (1-45)||(39426286-39426330)
[»] chr8 (2 HSPs)
chr8 (11-46)||(21360365-21360400)
chr8 (4-43)||(42761792-42761831)
[»] chr7 (1 HSPs)
chr7 (1-44)||(47270625-47270668)
[»] chr2 (3 HSPs)
chr2 (1-44)||(30217549-30217592)
chr2 (6-44)||(4446852-4446890)
chr2 (1-45)||(30721564-30721608)
[»] chr5 (1 HSPs)
chr5 (10-44)||(21213953-21213987)
[»] chr4 (1 HSPs)
chr4 (3-45)||(15178628-15178670)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 32 - 373
Target Start/End: Complemental strand, 34897940 - 34897598
Alignment:
Q  32 aggatcctaacccctctcacccacctctattacatgttgacttggattccaacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897940 aggatcctaacccctctcacccacctcaattacatgttgacttggattccgacaaattctccaaaaacaaaacagtttttacaatgatattttctatttg 34897841  T
Q  132 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctannnnnnnn-atcagctgatttgtccatttctacaacatttaagaaat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  34897840 tatcaaaattatagttctaccgaacaaaacggtattgaagatgtccacttctatttttttttatcagctgatttgtccatttctacaacatttaagaaat 34897741  T
Q  231 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34897740 ggagagagggtttttatatcatctctcctattcctcctctccccacaccgaactcatgtcccaatgatgcctttttataatatagtaaattatatttaaa 34897641  T
Q  331 atacagtaaattactataagatgccttttatatagtaaatctc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34897640 atacagtaaattactataagatgccttttatatagtaaatctc 34897598  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1995520 - 1995573
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacccctctcaccca 54  Q
    ||||||||||||||||||| || ||||||||||||||||||||| | |||||||    
T  1995520 tgtgtacttccatttatttgataaaatgaagaggatcctaacccatgtcaccca 1995573  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 9953035 - 9952993
Alignment:
Q  2 gtgtacttccatttattttatcaaatgaagaggatcctaaccc 44  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  9953035 gtgtacttccatttattttatcaaatggagaggatcttaaccc 9952993  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2800610 - 2800566
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacccc 45  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  2800610 tgtgtatttccattaattttatcaaatggagaggatcctaacccc 2800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7215851 - 7215807
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacccc 45  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||    
T  7215851 tgtgcacttccatttattttatcaaatggagaggatactaacccc 7215807  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35534783 - 35534741
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacc 43  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  35534783 tgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 32887772 - 32887735
Alignment:
Q  9 tccatttattttatcaaatgaagaggatcctaacccct 46  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  32887772 tccatttattttatcaaatgaagaggatcctaatccct 32887735  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39426286 - 39426330
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacccc 45  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||    
T  39426286 tgtgtacttccatttattttatcaaatggagatgatactaacccc 39426330  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 21360365 - 21360400
Alignment:
Q  11 catttattttatcaaatgaagaggatcctaacccct 46  Q
    |||||||||||||||||| |||||||||||||||||    
T  21360365 catttattttatcaaatggagaggatcctaacccct 21360400  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 42761792 - 42761831
Alignment:
Q  4 gtacttccatttattttatcaaatgaagaggatcctaacc 43  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42761792 gtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47270625 - 47270668
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaaccc 44  Q
    |||||| ||||||||||||||||||||  |||||||||||||||    
T  47270625 tgtgtaattccatttattttatcaaatagagaggatcctaaccc 47270668  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30217549 - 30217592
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaaccc 44  Q
    ||||| |||||||||||||||||||||  |||||||||||||||    
T  30217549 tgtgtgcttccatttattttatcaaatagagaggatcctaaccc 30217592  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 4446890 - 4446852
Alignment:
Q  6 acttccatttattttatcaaatgaagaggatcctaaccc 44  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  4446890 acttccatttattttatcaaatggagaggatactaaccc 4446852  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30721608 - 30721564
Alignment:
Q  1 tgtgtacttccatttattttatcaaatgaagaggatcctaacccc 45  Q
    |||||||||| ||||||||||||||||| || ||||| |||||||    
T  30721608 tgtgtacttctatttattttatcaaatggagcggatcttaacccc 30721564  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 21213953 - 21213987
Alignment:
Q  10 ccatttattttatcaaatgaagaggatcctaaccc 44  Q
    ||||||||||||||||||| |||||||||||||||    
T  21213953 ccatttattttatcaaatggagaggatcctaaccc 21213987  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 15178670 - 15178628
Alignment:
Q  3 tgtacttccatttattttatcaaatgaagaggatcctaacccc 45  Q
    |||||||||||| ||||||||||||| |||| |||||||||||    
T  15178670 tgtacttccattcattttatcaaatggagagaatcctaacccc 15178628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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