View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20988_low_7 (Length: 315)
Name: NF20988_low_7
Description: NF20988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20988_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 2319421 - 2319718
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2319421 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacaactctcattcatgaatctccg |
2319520 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2319521 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatctt |
2319620 |
T |
|
| Q |
201 |
ctcctcttgtgaaatcaatttaacattgcagcagcttctatgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattt |
298 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319621 |
ctcctcttgtgaaatcaatttaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattt |
2319718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1259594 - 1259402
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1259594 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
1259495 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1259494 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
1259402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 37242882 - 37242690
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37242882 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctctgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
37242783 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37242782 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
37242690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 34873125 - 34873273
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
34873125 |
aacatcaaaacacaccaccaattctcctcccaccacgccagttttgcaatagcttgaatgacacaggtcttctcaaacagctctcattcatgaatctccg |
34873224 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgattt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34873225 |
agtatcttctccaacattatagttttttaattaatttttcatataattt |
34873273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 18246847 - 18246655
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18246847 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
18246748 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
193 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18246747 |
agcatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
18246655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 16989390 - 16989582
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16989390 |
aacatcaaaacacaccaccaattctcctcccaccacgccaactttgcaatagcttgaatgacacaaatcttctcaaacagctctcattcatgaatctccg |
16989489 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16989490 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
16989582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 16989980 - 16990095
Alignment:
| Q |
177 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagcagcttctatgtggaacacactgccatacacaaactcaattataa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16989980 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataa |
16990079 |
T |
|
| Q |
277 |
gaaaaattggaatctg |
292 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
16990080 |
gaaaaattggaatctg |
16990095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 31235046 - 31234854
Alignment:
| Q |
1 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
31235046 |
aacatcaaaacacaccaccaattctcctcccaccacgccagctttgcaatagcttgaatgacatagatcttcttaaatagctctcattcatgaatctccg |
31234947 |
T |
|
| Q |
101 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234946 |
agtatcttctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
31234854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 32972465 - 32972406
Alignment:
| Q |
211 |
gaaatcaatttaacattgcagcagcttctatgtggaacacactgccatacacaaactcaa |
270 |
Q |
| |
|
||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
32972465 |
gaaatcaatgaaatattgcagttgcttctatggggaacacactgacatacacaaactcaa |
32972406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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