View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20989_high_2 (Length: 438)
Name: NF20989_high_2
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 108 - 434
Target Start/End: Complemental strand, 8813926 - 8813602
Alignment:
| Q |
108 |
atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttt-ggacagtctagaatagttcccttccaaatcatcatttttgtggtg |
206 |
Q |
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| T |
8813926 |
atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttttggacagtctagaatagttcccttccaaatcatcatttttgtggtg |
8813827 |
T |
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| Q |
207 |
catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagagta |
306 |
Q |
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| T |
8813826 |
catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag-- |
8813729 |
T |
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| Q |
307 |
ctatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttaga |
406 |
Q |
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| T |
8813728 |
-tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcgaaactagttcataaattgagggttatatccaccttaga |
8813630 |
T |
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| Q |
407 |
gataggacaaatacaagtataatctacc |
434 |
Q |
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| T |
8813629 |
gataggacaaatacaagtacaatttacc |
8813602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 108 - 434
Target Start/End: Original strand, 7078750 - 7079073
Alignment:
| Q |
108 |
atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcatttttgtggtgc |
207 |
Q |
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| T |
7078750 |
atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcaattttgtggtgc |
7078849 |
T |
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| Q |
208 |
atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagagtac |
307 |
Q |
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| T |
7078850 |
atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag--- |
7078946 |
T |
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| Q |
308 |
tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttagag |
407 |
Q |
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| T |
7078947 |
tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcaaaactagttcataaattgagggttatatccaccttagag |
7079046 |
T |
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| Q |
408 |
ataggacaaatacaagtataatctacc |
434 |
Q |
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| T |
7079047 |
ataggacaaatacaagtacaatttacc |
7079073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 8814142 - 8814051
Alignment:
| Q |
14 |
atttttgtgttaatgttacaagtataatcgaattaaagtgtgattttgctccattaaaaatcaacattagttgcgggatttaagttcgtggg |
105 |
Q |
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| T |
8814142 |
atttttgtgttaatgttacaagtataatcgaattaaagtgtggttttgctccattaaaaatcaacattagcagtgggatttaagttcgtggg |
8814051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 7078534 - 7078624
Alignment:
| Q |
14 |
atttttgtgttaatgttacaagtataatcgaattaaagtgtgattttgctccattaaaaatcaacattagttgcgggatttaagttcgtgg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
7078534 |
atttttgtgttaatgttacaagtataatcgaattaaagtgtggttttgctccattaaaaatcaacattagcagtgggatttaagtttgtgg |
7078624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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