View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20989_high_4 (Length: 364)
Name: NF20989_high_4
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 31649542 - 31649881
Alignment:
| Q |
10 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31649542 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
31649641 |
T |
|
| Q |
110 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacnnnnnnnnnncaagaaaaacggacaaaactaagtctc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
31649642 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacataaaaaaaacgagaaaaacggacaaaactaggtctc |
31649741 |
T |
|
| Q |
210 |
atttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31649742 |
gtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
31649841 |
T |
|
| Q |
310 |
cacgccacacgctaagatgaaaagaaaattgtgttagata |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31649842 |
cacgccacacgctaagatgaaaagaaaattttgttagata |
31649881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 43878891 - 43878792
Alignment:
| Q |
52 |
accttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaa |
151 |
Q |
| |
|
|||| ||||||||| | ||||| |||||||| ||||| |||||| ||||||| || | |||||||||||| || | ||| |||||||| ||||||||| |
|
|
| T |
43878891 |
acctcactctcttctctagttccagatgcaagtgcctcgagtactcttattctcgactgatatttttcttcccgggccttaaaaagattactttgctgaa |
43878792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University