View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20989_high_5 (Length: 325)
Name: NF20989_high_5
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 4059410 - 4059113
Alignment:
| Q |
12 |
caaaggtcctatgttgtataggagcagctgtggcccatggtcccacaggaaacgtacgagggttatttggagccataggatgacgacgcgtggcagcatc |
111 |
Q |
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| T |
4059410 |
caaaggtcctatgttggattggagcagctgtggcccatggtcccacggaaaacgtacgagggtgatttgaagccataggatgacgacgcgtggcagcatc |
4059311 |
T |
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| Q |
112 |
aacggcagatgatggaacagcgacacgctcacaagaggggcacatggtaagtgttgttggtggtgtcatttgcatgtagaattgtggggaaagtttcaat |
211 |
Q |
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| T |
4059310 |
aacggcagatgatggaacagcgacacgctcacaagaggggcacatggtaagtgttgttggtggtgtcatttgcatgtagaattgtggggaaagtttcaat |
4059211 |
T |
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| Q |
212 |
gctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatcttttcaaaaattcacaatctgcctctgtttgctt |
309 |
Q |
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| T |
4059210 |
gctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatcttttcaaaaattcacaatctacctctgtttgctt |
4059113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 41451905 - 41452092
Alignment:
| Q |
122 |
gatggaacagcgacacgctcacaagaggggcacatggtaagtgttgttggtggtgtcatttgcatgtagaattgtggggaaagtttcaatgctcttaact |
221 |
Q |
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| T |
41451905 |
gatggaacagccacacgttcacaagaagggcacatagtaagagtagttggtggtgtcatttgcatgtaaaattgtggggaaagtttcagtgctctaagct |
41452004 |
T |
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| Q |
222 |
cttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatcttttcaaaaattcacaatctgcctctgtttgctt |
309 |
Q |
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| T |
41452005 |
cttgtacttccttctgtagtctcctattctcctccgttagattttcacagcaccttttcaacacttcacaatcaacctctgtttgctt |
41452092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 282
Target Start/End: Complemental strand, 891307 - 891159
Alignment:
| Q |
134 |
acacgctcacaagaggggcacatggtaagtgttgttggtggtgtcatttgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctt |
233 |
Q |
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| T |
891307 |
acacgctcacacgaagggcacattgtgagagtggtgggaggattcatttgcatgtagagttgtggagataacttcaatgccctaagctcttgcacttcct |
891208 |
T |
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| Q |
234 |
tttgcaaccgtctattttcatccgttagattctcacaacatcttttcaa |
282 |
Q |
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| T |
891207 |
tttgcaacctcctattctcatcagttagagtctcacagcatctcttcaa |
891159 |
T |
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