View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20989_low_2 (Length: 490)
Name: NF20989_low_2
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 51 - 473
Target Start/End: Complemental strand, 10670613 - 10670191
Alignment:
| Q |
51 |
taaaaacaaatctgattcagaaattagtggtaactttttaacctattagcgactttctattggaacaaaataggtacgattctaattcaatttatctact |
150 |
Q |
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| T |
10670613 |
taaaaacaaatctgattcagaaattagtgggaactttttaacctattagtgactttctcttggaacaaaataggtacaattctaattcaatttatctact |
10670514 |
T |
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| Q |
151 |
cttcttccttatctattaccaattggatccatgtttttggagctcttcgactgcttaggttgataagtacaatgtatgcatttgttgttaactttattct |
250 |
Q |
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| T |
10670513 |
tttctcccttatctattaccaattggatccatgtttttggagttcttcgactgcttaggttgataaatacaatgtatgcatttgttgttaactttcttct |
10670414 |
T |
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| Q |
251 |
ctacataatatgtttggtatccataacttgcatctgatttactttgtttcagatgtcacttttttaatactcatttttgaaatttaaagcaaattgcttg |
350 |
Q |
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| T |
10670413 |
ctacataatatgtttggtatccataacttgcatctgatttactttgtttcagatgtcacttttttaatactcatttttgaaatttaatgcaaattgcttg |
10670314 |
T |
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| Q |
351 |
tcatataaattcttctatcttaacagttctgatgtttatatatagaagacaaataaggaattatgttatgtaatttgcttctcttaaattcctctatctt |
450 |
Q |
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| T |
10670313 |
tcatataaattcttctatcttaacagttctgatgtttatatatagaagacaaataaggaattatgttatgtaaattgcttctcttaaattcctctatctt |
10670214 |
T |
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| Q |
451 |
cccatcttggaggtattttcatt |
473 |
Q |
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| T |
10670213 |
cccatcttggaggtattttcatt |
10670191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10670639 - 10670697
Alignment:
| Q |
1 |
gtttcaattaagaaactaatatggtttaacaataaatttcaagtcatgattaaaaacaa |
59 |
Q |
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| T |
10670639 |
gtttcaattaagaaactaatatagtttaacaataaatttcaagtcatgattaaaaacaa |
10670697 |
T |
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