View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20989_low_5 (Length: 378)
Name: NF20989_low_5
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 115426 - 115258
Alignment:
| Q |
165 |
atatggctcttaatttgataataactctgcatgaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacag--agaggtagtc |
262 |
Q |
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| T |
115426 |
atatggctcttaatttgataataactctgcatgaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacagagagaggtagtc |
115327 |
T |
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| Q |
263 |
accaatcaagatagagaataaaacattagactatagttatgtggcaacaggtgttaagattgaaaacga |
331 |
Q |
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| T |
115326 |
accaatcaagatagagaataaaacattagactatagttatgtggcaacaggtgttaagattgaaaacga |
115258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 115704 - 115540
Alignment:
| Q |
1 |
actcggatttagaaaatagagacgtagagtgtcgttctttgaaaaaatcaacttagaatacgtacgcagcatcattttaattttagggtcttatcttaat |
100 |
Q |
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| T |
115704 |
actcggatttagaaaatagagacgtagagtgtcgttctttgaaaaa-tcaatttagaatacgtacgcagcatcattttaattttagggtcttatcttaat |
115606 |
T |
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| Q |
101 |
catctcctttccccgcaacttatcacatttggctaatgcaggaaacatttcacatcaacacatcat |
166 |
Q |
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| T |
115605 |
catctcctttccccgcaacttatcacatttggctaatgcaggaaacatttcacatcaacacatcat |
115540 |
T |
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