View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20989_low_8 (Length: 318)
Name: NF20989_low_8
Description: NF20989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20989_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 3592917 - 3592636
Alignment:
| Q |
15 |
cataggaataggtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
114 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592917 |
cataggaataagtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
3592818 |
T |
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| Q |
115 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592817 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataactaacctatggacat |
3592718 |
T |
|
| Q |
215 |
tagacactaaactaccatgtgttaacaaatcannnnnnnnatatttttatatcaaagcaatggtttaaaacctgaactggacatcg |
300 |
Q |
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|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592717 |
tagaaactaaactaccatgtgttaacaaatcattttt----tttttttatatcaaagcaatggtttaaaacctgaactggacatcg |
3592636 |
T |
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