View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_1 (Length: 543)
Name: NF2098_high_1
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 48570340 - 48569807
Alignment:
| Q |
1 |
ccacaagtgataatgtttgctatcaattttgtttttatatctgtgttcttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcat |
100 |
Q |
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| T |
48570340 |
ccacaagtgataatgtttgctattaattttgtttttatat--gtgttcttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcat |
48570243 |
T |
|
| Q |
101 |
cttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacaattgtcccttcgaggctaatatgcttatttttccccatgacc |
200 |
Q |
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| T |
48570242 |
cttgaaaactgaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacagttgtcccttcgaggctaatatgcttattt--ccccatgacc |
48570145 |
T |
|
| Q |
201 |
acgagttcaatttctccgacatt----tgttccaacgtcttccacgtggcctctctacccggatttgcccccaccggcaatcccaaatattttaacggaa |
296 |
Q |
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| T |
48570144 |
acgagttcaatttctccgacattaatttgttccaacgtcttccatgtggcctctctacccggatttgcccccaccagcaatcccaaatatttaaatggaa |
48570045 |
T |
|
| Q |
297 |
gtctcccttcactaaaattcaaaaaggttacaatgcttatttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaac |
396 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48570044 |
gtctcccttcactaaaattcaaaaaggttacgatgcttatttcaagtaaaatatttcgccaactaagattgagctagcgatagggttagactctcgcaac |
48569945 |
T |
|
| Q |
397 |
atgacaaactcaagtttgaatactagttatagttaagagaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcct |
496 |
Q |
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| T |
48569944 |
atgacaaactcaagtttgaatactagttatagttaagagaggtatctacatgttgcgatccgacacaacttgaataggattacctcatatggaggatcct |
48569845 |
T |
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| Q |
497 |
ctagaaaaccaaaactatatattttacatcagtataat |
534 |
Q |
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| T |
48569844 |
ctagaaaaccaaaactatatattttacaacagtataat |
48569807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 13853148 - 13853082
Alignment:
| Q |
256 |
cggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaag |
322 |
Q |
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| T |
13853148 |
cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaag |
13853082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 4864511 - 4864593
Alignment:
| Q |
79 |
tcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacaatt |
161 |
Q |
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|||||||||| |||||||||| ||||||| |||||||||||| || ||||| ||||| | | ||||||||||| |||||| |
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| T |
4864511 |
tcttcaaaactttcaccggcattttgaaaaaggaaagatgaaagataggaatagaattcaaaatagaattaagaaggacaatt |
4864593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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