View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_13 (Length: 308)
Name: NF2098_high_13
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 39 - 305
Target Start/End: Original strand, 43311670 - 43311937
Alignment:
| Q |
39 |
agatagaat-agtataaggatacaacaatcaaaagacaacaatattgtcagattgcaactaagaaactaatcaccaacgaacatgtgtagtcaatggaca |
137 |
Q |
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| T |
43311670 |
agatagaattagtataaggatacaacaatcaaaagacaacaatagtgtccgattgcaactaagaaaccaatcacaaacgtacatgtgcagtcaatggaca |
43311769 |
T |
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| Q |
138 |
atgtctttgctttatgattaaaaatatataattaaaaatattctttgaaaagttcattccattaagttgg-aattaatcttgatttaaaatgaactatag |
236 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
43311770 |
atgtctttgctttatgattaaaaatatatgatt-aaaatattctttgaaaagttcattccattaagttggaaattaatcttgatttaaaattatctatag |
43311868 |
T |
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| Q |
237 |
atgtcacgaatctcagaaagaaaaaagtagatcacgtgttacatttcgtggggcggcccaaaagtaata |
305 |
Q |
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| T |
43311869 |
atgtcacgaatctaagaaagaaaaaagtagatcacttgttacatttcgtggggcggcccaaaagtaata |
43311937 |
T |
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