View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_15 (Length: 301)
Name: NF2098_high_15
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_15 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 48569828 - 48569529
Alignment:
| Q |
1 |
atatattttacatcagtataatagccgcactgcacatggcaacttattacaagataactatgggagagnnnnnnnctgatgacgtgcagaagatagcctt |
100 |
Q |
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| T |
48569828 |
atatattttacaacagtataatagccgcactgcacatggcaacttattacgagataactatgggagagaaaaaaactgatgacgtgcagaagatagcctt |
48569729 |
T |
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| Q |
101 |
ccaacatccactaaatcatatacaagcctccagaatttgcgtttaatnnnnnnncatattgttgagctcataaacctgcattcatgttcttgatgtaatt |
200 |
Q |
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| T |
48569728 |
ccaacatccactaaatcatatacaagcctccagaatttgcgtttaataaaaaa-cattttgttgagctcataaacctgcattcatgttcttgatgtaatt |
48569630 |
T |
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| Q |
201 |
aaataaactcatttgaaatacatttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaatt |
300 |
Q |
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| T |
48569629 |
aaataaactcatttgaaatacatttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaatt |
48569530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 36145966 - 36145903
Alignment:
| Q |
238 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattc |
301 |
Q |
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| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattc |
36145903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 10821422 - 10821485
Alignment:
| Q |
238 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattc |
301 |
Q |
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| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattc |
10821485 |
T |
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