View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2098_high_2 (Length: 508)
Name: NF2098_high_2
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 156 - 436
Target Start/End: Complemental strand, 29030502 - 29030228
Alignment:
| Q |
156 |
tgaaattaattatctcatatagaaagtgtttgacaaagactttctagacaacatatgtgaaatagtttcatctttggatgctagctgctagctgctagat |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
29030502 |
tgaaattaattatctcatatagaaagtatttgacaaagactttctagacaacatatgtgaaataatttcatctttggatgctagctgctag-------at |
29030410 |
T |
|
| Q |
256 |
atagggttggatttacaattgtaaactattgtccgatcttaatgttattctatagattaactgatggagacataagaa-ctaatatgtgttatatatctc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29030409 |
atagggttggatttacaattgtaaactattgtccgatcttaatgttattctatagattaactgatggagacataagaagctaatatgtgttatatatctc |
29030310 |
T |
|
| Q |
355 |
tcgttgtttatttcacatgaaatatgtacgatgagtgatagatgaagatataattgaaaatctaaaagtatataatcaatca |
436 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29030309 |
tcgttgtttatttcacatgaaatatgtatgatgagtgatagatgaagatataattgaaaatctgaaagtatataatcaatca |
29030228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 29030586 - 29030488
Alignment:
| Q |
40 |
taacaatgattatgttgcaaactctctttgtatcaatgaattattttatgtccttaa-nnnnnnnncttttgaacttatacttctgaaattagttatct |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
29030586 |
taacaatgattatgttgcaaactctctttgtatcaatgaattattttatgtccttaatttttttttctttcgaacttatacttctgaaattaattatct |
29030488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 4056664 - 4056610
Alignment:
| Q |
397 |
tgaagatataattgaaaatctaaaagtatataatcaatcaagatgatacattaga |
451 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
4056664 |
tgaagatataattgaaaacctaaaagtatattatctatcaagaggatacattaga |
4056610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 3924020 - 3923976
Alignment:
| Q |
400 |
agatataattgaaaatctaaaagtatataatcaatcaagatgata |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
3924020 |
agatataattgaaaatctaaaagtatataattgatcacgatgata |
3923976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 1167443 - 1167394
Alignment:
| Q |
397 |
tgaagatataattgaaaatctaaaagtatataatcaatcaagatgataca |
446 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||| | |||||| |
|
|
| T |
1167443 |
tgaagatataattgaaaatataaaattatataatcgatcaaaaagataca |
1167394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 17785952 - 17785889
Alignment:
| Q |
415 |
tctaaaagtatataatcaatcaagatgatacattagatgagtagttattgaaatttaatcccaa |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | | || |||||| |||||| |||||||| |
|
|
| T |
17785952 |
tctaaaagtatataatcaatcaagatgatacttcaaaggattagttaatgaaatcgaatcccaa |
17785889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 488
Target Start/End: Original strand, 1265904 - 1266012
Alignment:
| Q |
379 |
tgtacgatgagtgatagatgaagatataattgaaaatctaaaagtatataatcaatcaagatgatacattagatgagtagttattgaaatttaatcccaa |
478 |
Q |
| |
|
|||| |||||| ||| | |||| |||||||| ||| |||||| |||||||||||| ||| |||||||||| ||||||||| |||||| ||||| ||| |
|
|
| T |
1265904 |
tgtatgatgagagatcggtgaaaatataattaaaacactaaaaatatataatcaat-tagagaatacattagaggagtagttaatgaaatctaatctcaa |
1266002 |
T |
|
| Q |
479 |
tacgtctttt |
488 |
Q |
| |
|
|| |||||| |
|
|
| T |
1266003 |
cacatctttt |
1266012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University