View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_33 (Length: 225)
Name: NF2098_high_33
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 47919986 - 47920190
Alignment:
| Q |
3 |
aggatgtggaaaactacagtaccatctaaaataataatgttcggatgaagattacttcaagacaaattatcaactcggctgaaattatggaaaataattc |
102 |
Q |
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| T |
47919986 |
aggatgtggaaaactacagtaccatctaaaataataatgttcggatgaagattacttcaagacaaattatcaactcggctgaaattatggaaaataattc |
47920085 |
T |
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| Q |
103 |
aagatatgcaccaacaatgttgtgtattgtgttttagaaaaatcgtaactgccaatcatttactgcaagctgctcagtacttggatgggaacacaacgaa |
202 |
Q |
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| T |
47920086 |
aagatatgcaccaacaatgttgtgtattgtgttttagaaaaatcgtaactgccaatcatttactgcaagctgctcagtacttggatgggaacacaacgaa |
47920185 |
T |
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| Q |
203 |
gtagg |
207 |
Q |
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||||| |
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| T |
47920186 |
gtagg |
47920190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 47926241 - 47926376
Alignment:
| Q |
3 |
aggatgtggaaaactacagtaccatctaaaataataatgttcggatgaagattacttcaagacaaattatcaactcggctgaaattatggaaaa------ |
96 |
Q |
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| T |
47926241 |
aggatctggaaaactacagtaccatctaaaataat----ttcagatggagattacttgaagacagattataaactcgggtgaaagtatggaaaagatgtg |
47926336 |
T |
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| Q |
97 |
taattcaagatatgcaccaacaatgttgtgtattgtgttt |
136 |
Q |
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| T |
47926337 |
taattcaagatatgcactaacaatgttgtgtattgtgttt |
47926376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 589722 - 589623
Alignment:
| Q |
53 |
attacttcaagacaaattatcaactcggctgaaattatggaaaa------taattcaagatatgcaccaacaatgttgtgtattgtgttttagaaaaatc |
146 |
Q |
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| T |
589722 |
attacttcaagacag-ttaccaactcgggtggaattatggaaaagaggtgtaattcaagatgtgcaccaacaatattgtgtattttgctttagagaaatc |
589624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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