View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_34 (Length: 220)
Name: NF2098_high_34
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 6343193 - 6343044
Alignment:
| Q |
56 |
gtttgtggtgattctctggtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactcata |
155 |
Q |
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| T |
6343193 |
gtttttggtgattctcttgtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactcata |
6343094 |
T |
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| Q |
156 |
gagcttctggtcgtttctccaatggcctcaacatgcctgacctaattagt |
205 |
Q |
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| T |
6343093 |
gagcttctggtcgtttctccaatggcctcaacatgcctgacctaattagt |
6343044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 48074382 - 48074524
Alignment:
| Q |
56 |
gtttgtggtgattctctggtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactcata |
155 |
Q |
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| T |
48074382 |
gtttttggtgattcacttgttgacaatggcaacaataactacttagcaaccactgctcgtgctgattcttacccttatggcattgattatccaactcacc |
48074481 |
T |
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| Q |
156 |
gagcttctggtcgtttctccaatggcctcaacatgcctgacct |
198 |
Q |
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| T |
48074482 |
gtgccactggacgcttctccaatggcctcaacatgcctgacct |
48074524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 48091443 - 48091578
Alignment:
| Q |
61 |
tggtgattctctggtggataatggaaataataacttcctagccactactgctcgtgctgattcatatccttatggaattgattctcaaactcatagagct |
160 |
Q |
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| T |
48091443 |
tggtgattctcttgttgataatggtaacaataattacttagcaactactgctcgagctgatgctcctccttatggcattgattatccaactcgtagaccc |
48091542 |
T |
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| Q |
161 |
tctggtcgtttctccaatggcctcaacatgcctgac |
196 |
Q |
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| T |
48091543 |
accggacgtttctctaatggctacaacattcctgac |
48091578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 1807295 - 1807383
Alignment:
| Q |
107 |
actgctcgtgctgattcatatccttatggaattgattctcaaactcatagagcttctggtcgtttctccaatggcctcaacatgcctga |
195 |
Q |
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| T |
1807295 |
actgctcgtgctgattctcctccttatggaattgattatccaactcgtaaaccaactggtcgtttttcaaatggcttcaatattcctga |
1807383 |
T |
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