View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_35 (Length: 215)
Name: NF2098_high_35
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 2105646 - 2105837
Alignment:
| Q |
18 |
attatgttgtgataaaaattaattttggtttaattgtatttatgttaaattgatagaatatagttgg--------ggtaaaatggtttatcattcgatga |
109 |
Q |
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| T |
2105646 |
attatgttgtgataaaaattaattttggtttaattgtatttatgttaaattgatagaatatagttgaagtccgaaggtaaaatggtttatcattcgatga |
2105745 |
T |
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| Q |
110 |
cttcatgtaaagtgagttaaacaataaatttgaatgtagaatcaatctcagtataaagactttagtttctagtttgaccttattagaataat |
201 |
Q |
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| T |
2105746 |
cttcatgtaaagtgagttaaacaataaatttgaatgtagaatcaatctcagtataaagactttagtttctagtttgaccttattagaataat |
2105837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 2096567 - 2096620
Alignment:
| Q |
30 |
taaaaattaattttggtttaattgtatttatgttaaattgatagaatatagttg |
83 |
Q |
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| T |
2096567 |
taaaaactaattttgatttaattgtatttatataaaattgatagaatgtagttg |
2096620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 882767 - 882738
Alignment:
| Q |
118 |
aaagtgagttaaacaataaatttgaatgta |
147 |
Q |
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| T |
882767 |
aaagtgagttaaacaataaatttgaatgta |
882738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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