View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2098_high_36 (Length: 202)
Name: NF2098_high_36
Description: NF2098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2098_high_36 |
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| [»] scaffold0008 (2 HSPs) |
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| [»] scaffold0251 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 194; Significance: 1e-106; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 261351 - 261552
Alignment:
| Q |
1 |
caagttacttaactcaactccaaatatcatcatcatatactatagaaaaatattcagattccattggcaaagatgtcagcatttctcttggaacgtggta |
100 |
Q |
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| T |
261351 |
caagttacttaactcaactccaaatatcatcatcatatactatagaaaaatattcagattccatcggcaaagatgtcagcatttgtcttggaacgtggta |
261450 |
T |
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| Q |
101 |
catgtcagcctcatacggttgtgtccaaaaactatcaactgttgattcgttgtaagcatctaaaaagcttccaaaatcattatccataacaaaactttca |
200 |
Q |
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| T |
261451 |
catgtcagcctcatacggttgtgtccaaaaactatcaactgttgattcgttgtaagcatctaaaaagcttccaaaatcattatccataacaaaactttca |
261550 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
261551 |
tt |
261552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 236541 - 236727
Alignment:
| Q |
14 |
tcaactccaaatatcatcatcatatactatagaaaaatattcagattccattggcaaagatgtcagcatttctcttggaacgtggtacatgtcagcctca |
113 |
Q |
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| T |
236541 |
tcaactccaaatatccttgtcatatactatagaaaaattttcagattccatcgacaaaggtatcagtagttcagttggaacgtgggacatgtcaacttca |
236640 |
T |
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| Q |
114 |
tacggttgtgtccaaaaactatcaactgttgattcgttgtaagcatctaaaaagcttccaaaatcattatccataacaaaactttca |
200 |
Q |
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| T |
236641 |
tatggttgtgtccaaaaactatccactgttgactcgttgtaagcatctaaaaagcttccaaaatcattatccataacaaaactttca |
236727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 10544 - 10379
Alignment:
| Q |
14 |
tcaactccaaatatcatcatcatatactatagaaaaatattcagattccattggcaaagatgtcagcatttctcttggaacgtggtacatgtcagcctca |
113 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||| || |||| ||||||| |||||||||| ||| |
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| T |
10544 |
tcaattccaaatatcgtcatcatatactatagaaaaatattcaggttccattggcaaaggtgccagcaattggcttgaaacgtgggacatgtcagcttca |
10445 |
T |
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| Q |
114 |
tacggttgtgtccaaaaactatcaactgttgattcgttgtaagcatctaaaaagcttccaaaatca |
179 |
Q |
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| T |
10444 |
tatggttgtgtccaaaaactatcaattgttgactccttgtacgcatctaaaaagctttcaaaatca |
10379 |
T |
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